Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B13
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48160.1 68415.m06031 PWWP domain-containing protein                29   4.2  
At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    28   7.3  
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)...    28   7.3  
At2g01220.2 68415.m00035 expressed protein                             28   9.6  
At2g01220.1 68415.m00034 expressed protein                             28   9.6  
At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative / serin...    28   9.6  

>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 71   PVRISSALSLSTAHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 229
            P+R++  LS ST H+ G +    S ++L  S P++DG+  + R    H  PH   P
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPHPPPP 1239


>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
            family protein similar to SP|P50532 Chromosome assembly
            protein XCAP-C {Xenopus laevis}; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +1

Query: 460  NVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEV 639
            N+EK +  L++KLQ  ++N   E  K  K     +Q   +K   +I         N Q++
Sbjct: 817  NLEKGSKQLKDKLQTNIENAGGEKLKGQKAKVEKIQTDIDKNNTEINRCNVQIETN-QKL 875

Query: 640  IXK----IQEAANAKQ 675
            I K    I+EA   K+
Sbjct: 876  IKKLTKGIEEATREKE 891


>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
           Similar to Arabidopsis luminal binding protein
           (gb|D89342); contains Pfam domain PF00012: dnaK protein
          Length = 678

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 463 VEKNATALREKLQAAVQN---TVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKN 627
           + K     R KL+  V N   TV + +KLAKK+S    E  EK+   +K A +   +N
Sbjct: 576 IMKEKIDARNKLETYVYNMKSTVADKEKLAKKIS---DEDKEKMEGVLKEALEWLEEN 630


>At2g01220.2 68415.m00035 expressed protein 
          Length = 388

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 486 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 391
           EG   LL+V    CG   PC   SA    KPP
Sbjct: 227 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 258


>At2g01220.1 68415.m00034 expressed protein 
          Length = 387

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 486 EGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 391
           EG   LL+V    CG   PC   SA    KPP
Sbjct: 226 EGHLKLLEVAMSVCGGGYPCFEISAINADKPP 257


>At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative /
           serine--tRNA ligase, putative similar to PIR|T03949
           serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
           contains Pfam profiles PF00587: tRNA synthetase class II
           core domain (G, H, P, S and T), PF02403: Seryl-tRNA
           synthetase N-terminal domain
          Length = 512

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
 Frame = +1

Query: 310 LRVRAATAQRLRQESPGXRSETRTARPRRLWNXXXXXXXXXXXXXXXXXLNVEKNATALR 489
           L VRA +A    Q+ P  ++   +ARP  LW                      +N+ A  
Sbjct: 45  LLVRAFSASAAVQDIPATQTSDSSARP--LWKAAIDFKWIRDNKEAVEINIRNRNSNANL 102

Query: 490 EKLQAAVQNTV---QESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIXKIQE 657
           E +    +N V   +E ++L ++ ++  ++   KL P  +    +  KN +E +  ++E
Sbjct: 103 EAVLQLYENMVNLQKEVERLREERNNVAKKMKGKLEPSERERLVEEGKNLKESLVTLEE 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,603,865
Number of Sequences: 28952
Number of extensions: 180273
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)