Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B11
         (908 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.5  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    22   7.6  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   7.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 498 CSFPEIAGYNFQQKEKVLFIC**TSQGYLYRALT 599
           C   +  G   +Q+E++  +C   + GY Y ALT
Sbjct: 171 CDSKKKKGPTPRQQEELCLVCGDRASGYHYNALT 204


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 348 RFSMCFVRLPTLSSIGY*C 404
           RF+   +RLP L SIG  C
Sbjct: 360 RFAKLLLRLPALRSIGLKC 378


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 677 FMLKXYSCQDGALRIDXSFLSFCFSP 600
           F+ + Y C++  LR     L+ C+ P
Sbjct: 77  FLKECYCCRESFLRERTITLTHCYDP 102


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 223 TKRGNILKIVREHYLRDDLL 282
           TK G + ++V   YL+ DL+
Sbjct: 189 TKLGELAQVVELEYLKTDLI 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,847
Number of Sequences: 336
Number of extensions: 3676
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)