Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B11
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...   113   4e-26
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    31   0.17 
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   8.5  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score =  113 bits (271), Expect = 4e-26
 Identities = 70/182 (38%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
 Frame = +1

Query: 220 KTKRGNILKIVREHYLRDDLLCGSAACNTC----PHKDDELVLETS-PDSPCALFDFPH- 381
           +  RG + K+VRE YLR+D+ C S AC  C    P      VLE    + P  L  F H 
Sbjct: 24  RATRGKVQKVVREQYLRNDIPCQSRACPLCRSKLPKDSRGNVLEPILSEKPMFLEKFGHH 83

Query: 382 YLVLDTNVVLHQIXVLEE-DALTNVIILQTVLEEVKHQNTAVFQRLLDIISNKKRKFYSF 558
           YL+ D+N+  H I  LE  +   +VIILQTV  E+  ++  ++ R+  +   K ++F  F
Sbjct: 84  YLIPDSNIFYHCIDALEHPNNFFDVIILQTVFSEISSKSIPLYNRMKRLCQEKTKRFTPF 143

Query: 559 VNEXHKDTYIERSPGEKQNDRNDXSIRKAPSWHEYXLSINSLDGKXPKIXLVTDDENNRX 738
            NE   DT++ER   E  NDRND +IR A SW    L+   +     KI L+TDD  N  
Sbjct: 144 SNEFFVDTFVERLDDESANDRNDRAIRNAASWFASHLASLGI-----KIVLLTDDRENAR 198

Query: 739 LA 744
           LA
Sbjct: 199 LA 200


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 634 IRKAPSWHEYXLSINSLDGKXPKIXLVTDDENNRXLAPXRWPLFVVQXTD 783
           I K    +E   ++NS +GK PK    TDDE+N   +       VV+ +D
Sbjct: 254 IMKESKSYENSKALNSAEGKDPKAFFNTDDEDNMKKSSSHGDSEVVEASD 303


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 351 IGRGLQYQFIIFVWTCVTCCRSAQ*IVTQVMFSYNL--QYVTTLSFGKKGFCSPH 193
           +GR      ++ V+  VT   SA+ I    +F+Y++  QYV   + GK+   + H
Sbjct: 346 MGRAGANATLLLVFMAVTSAASAELIAVSSIFTYDIYKQYVRPRATGKELLYTGH 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,256
Number of Sequences: 5004
Number of extensions: 61664
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)