Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B11
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   1.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   1.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   8.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 339 DLSRFSMCFVRLPTLSSIGY*C 404
           D  RF+   +RLP + SIG  C
Sbjct: 377 DAGRFAKLLLRLPAIRSIGLKC 398


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 339 DLSRFSMCFVRLPTLSSIGY*C 404
           D  RF+   +RLP + SIG  C
Sbjct: 377 DAGRFAKLLLRLPAIRSIGLKC 398


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 477 GSETSKYCSFPEIAGYNFQQKEKVLFIC**TSQGYLYRALT 599
           G  +S  C   +  G   +Q+E++  +C   + GY Y ALT
Sbjct: 163 GYGSSDGCDARKKKGPTPRQQEELCLVCGDRASGYHYNALT 203


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 598  PGEKQNDRNDXSIRKAPSWHEYXLSINSLDGKXPK--IXLVTDDE 726
            PG +QN     ++R A ++H   ++ N +    P   + ++T +E
Sbjct: 930  PGSQQNVAGVFNLRPATTYHLRIVAENEIGASDPSDTVTIITAEE 974


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 260 ITCVTIYCADLQHVTHVHT 316
           + C  +YC+    +TH++T
Sbjct: 39  VICERVYCSRNSLMTHIYT 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,350
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)