Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B11
         (908 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17510.1 68415.m02025 ribonuclease II family protein similar ...   135   3e-32
At5g27500.1 68418.m03287 hypothetical protein hypothetical prote...    33   0.35 
At4g18820.1 68417.m02778 expressed protein                             30   1.8  
At3g26230.1 68416.m03272 cytochrome P450 family protein contains...    29   3.2  
At1g68210.1 68414.m07792 two-component responsive regulator fami...    29   3.2  
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot...    28   7.4  

>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score =  135 bits (327), Expect = 3e-32
 Identities = 75/184 (40%), Positives = 104/184 (56%)
 Frame = +1

Query: 193 MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACNTCPHKDDELVLETSPDSPCALFD 372
           M  +K F  KT+ G I K VRE YLRDD+ CG+ +C +C             DS  A   
Sbjct: 1   MLQSKVFNKKTRGGRIQKQVREVYLRDDIYCGAFSCKSC-------------DSSAARLS 47

Query: 373 FPHYLVLDTNVVLHQIXVLEEDALTNVIILQTVLEEVKHQNTAVFQRLLDIISNKKRKFY 552
               +V+DTNVVLHQI +LE  A+  V++L  VL+EVK++N +V+ R+  + SN  R+FY
Sbjct: 48  SSKIIVVDTNVVLHQIDLLENKAIDTVVVLSVVLDEVKNRNRSVYNRIRLLCSNPARQFY 107

Query: 553 SFVNEXHKDTYIERSPGEKQNDRNDXSIRKAPSWHEYXLSINSLDGKXPKIXLVTDDENN 732
            F N  HKDTY++    E  ND ND +IR A  W++  L      G   ++ LVT+D  N
Sbjct: 108 VFSNHVHKDTYVQAMEKESANDHNDRAIRVATLWYQKHL------GDTSQVLLVTNDREN 161

Query: 733 RXLA 744
           +  A
Sbjct: 162 KRKA 165


>At5g27500.1 68418.m03287 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 187

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = -1

Query: 239 MLPRLVLVRKVFVVHISSVLKQASTDRLILVSKIKI 132
           +L  LVL   VFVV +S+V+  A T+R +++++++I
Sbjct: 143 VLASLVLASSVFVVRVSAVVAYAMTERPVILARLEI 178


>At4g18820.1 68417.m02778 expressed protein
          Length = 1111

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = +1

Query: 385 LVLDTNVVLHQIXVLEEDALTNVIILQTVLEEVKHQNTAVFQRLLDIISNKKRKFYSFVN 564
           LV D  +V      L  D +  V  L+T++E    +  A+  +L  +I++     Y F  
Sbjct: 683 LVSDEKLVDLLDLALSADTVNTVKNLRTIME-TSVEPLALMSQLATVITDILAGSYDFTK 741

Query: 565 EXHKDTYIERSPGEKQN 615
           + HK  +  R P  K++
Sbjct: 742 DQHKRKFFRRQPLPKED 758


>At3g26230.1 68416.m03272 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 498

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 400 NVVLHQIXVLEEDALTNVII---LQTVLEEVKHQNTAVFQRLLDIISNKKR 543
           N  LH++ V E D L N II   L+  +EE+ H    +   LLD+I  +++
Sbjct: 231 NKKLHKVFV-EVDTLLNHIIDDHLKNSIEEITHDRPDIIDSLLDMIRKQEQ 280


>At1g68210.1 68414.m07792 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 663

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
 Frame = +1

Query: 310 PHKDDELVLETSPDSPCALFDFPHYLV-LDTNVVLHQIXVLEE--DALTNVIILQTVLEE 480
           P K +  +LET+  +P   + FP  +  L+TN +   +   E   DAL N++ L+T +EE
Sbjct: 523 PPKTNMAILETNYSNPLD-WVFPEDITSLETNTIQKSLVSCETSYDALDNMVPLETNMEE 581

Query: 481 VKHQNTAVFQ-RLLDIIS 531
           +   N A++   + D+IS
Sbjct: 582 M---NDALYDISIEDLIS 596


>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
           similar to SP|P22138 DNA-directed RNA polymerase I 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04563; RNA polymerase beta subunit, PF04560: RNA
           polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
           domain 2, PF04565: RNA polymerase Rpb2 domain 3,
           PF00562: RNA polymerase Rpb2 domain 6
          Length = 1114

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 391 ILDNVGSRTKHMENRERSPIPIHHLCVDMCYMLQIRTIN---RHASNVLL 251
           I D V ++T+HM+ +   P+ +  + VDM      +  N   RHA N ++
Sbjct: 782 IYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPII 831


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,661
Number of Sequences: 28952
Number of extensions: 313494
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)