Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B09
(1336 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 32 1.2
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 32 1.2
SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.2
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 31 1.6
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 31 1.6
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.8
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.8
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 31 2.8
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.8
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26) 29 6.4
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 6.4
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 29 8.4
SB_32093| Best HMM Match : MCM (HMM E-Value=0.004) 29 8.4
SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.4
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.4
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.4
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 31.9 bits (69), Expect = 1.2
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
G+ GG G GG Y G G G +G G GG GG
Sbjct: 810 GDGGGGGGGGGGGGGGDGGGYGDGGGFGDGGGYADGDGGGGGGGGGGGGG 859
Score = 31.1 bits (67), Expect = 2.1
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 794 GGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
GG G GG GG G G G+G G GG GG
Sbjct: 779 GGGGGDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGG 824
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXG 660
G+ GG G GG GG G G G+G G GG G
Sbjct: 777 GDGGGGGDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGG 825
Score = 29.1 bits (62), Expect = 8.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXG 660
G+ GG G GG GG G G G G G GG G
Sbjct: 783 GDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGGDGGGYG 831
Score = 29.1 bits (62), Expect = 8.4
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
G GG G GG Y G G G G G G GG GG
Sbjct: 823 GGGDGGGYGDGGGFGDGGG-YADGDGGGGGGGGGGGGGGGGGGGGGGGGG 871
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.9 bits (69), Expect = 1.2
Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 3/103 (2%)
Frame = +3
Query: 1023 PXXXXALXTXPPPC*XPXPTAXPXPPXAXLXXRCPLSRXXSLXPPPXRLXXPXM-SLXPP 1199
P + + PPP TA P PP + R P + PP + P + PP
Sbjct: 305 PPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPP 364
Query: 1200 RXPLXXLSTXXRXXPXLVRR--XVVXXRXPPSSPXYXAXPPSP 1322
P + P + R + PP P A PP P
Sbjct: 365 PPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPPGRGAPPPGP 407
>SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/79 (27%), Positives = 26/79 (32%)
Frame = +3
Query: 1053 PPPC*XPXPTAXPXPPXAXLXXRCPLSRXXSLXPPPXRLXXPXMSLXPPRXPLXXLSTXX 1232
P P P P P P L CPL ++ P P M P PL +
Sbjct: 308 PLPAMRPLPAMRPLPAMRPLPAMCPL---PAMRPLSAMRPLPAMRPLPAMRPLPAMRPLP 364
Query: 1233 RXXPXLVRRXVVXXRXPPS 1289
P R V R PP+
Sbjct: 365 AMRPLPAMRPVPAMRPPPA 383
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 718 PXPXXXPPT*XPPXKPXXXXSXXXPPWXSPXXPTPXP 828
P P PP PP P S PP P P P P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPP 404
Score = 30.7 bits (66), Expect = 2.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 689 PPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
PP PPP P P P PP P PPP
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPP 409
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 718 PXPXXXPPT*XPPXKPXXXXSXXXPPWXSPXXPTPXP 828
P P PP+ PP +P PP P P P P
Sbjct: 380 PPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPP 416
Score = 29.5 bits (63), Expect = 6.4
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 718 PXPXXXPPT*XPPXKPXXXXSXXXPPWXSPXXPTPXP 828
P P PP PP P PP P P P P
Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410
Score = 29.5 bits (63), Expect = 6.4
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 718 PXPXXXPPT*XPPXKPXXXXSXXXPPWXSPXXPTPXP 828
P P PP PP P PP +P P P P
Sbjct: 391 PPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Score = 29.5 bits (63), Expect = 6.4
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +1
Query: 718 PXPXXXPPT*XPPXKPXXXXSXXXPPWXSPXXPTPXPRTQSL 843
P P PP PP P PP P P P P +L
Sbjct: 393 PQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPAL 434
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 718 PXPXXXPPT*XPPXKPXXXXSXXXPPWXSPXXPTPXPRTQSLP 846
P P PP PP P PP P P P P P
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAP 420
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 31.5 bits (68), Expect = 1.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 1197 PRXPLXXLSTXXRXXPXLVRRXVVXXRXPPSSPXYXAXPP 1316
P PL R P L+R + R PPS P Y PP
Sbjct: 265 PPSPLRYPPIPPRYPPSLIRYPTLPPRYPPSPPRYPPSPP 304
Score = 31.1 bits (67), Expect = 2.1
Identities = 28/102 (27%), Positives = 33/102 (32%)
Frame = +3
Query: 1011 FXPNPXXXXALXTXPPPC*XPXPTAXPXPPXAXLXXRCPLSRXXSLXPPPXRLXXPXMSL 1190
+ P+P + PP PT P P + R P S PP P L
Sbjct: 264 YPPSPLRYPPIPPRYPPSLIRYPTLPPRYPPSP--PRYPPSPPRY---PPSLHRYPQSPL 318
Query: 1191 XPPRXPLXXLSTXXRXXPXLVRRXVVXXRXPPSSPXYXAXPP 1316
P P+ R P R R PPS P Y PP
Sbjct: 319 RYPPSPIRYPPLPSRYPPSPPRYPSSHPRYPPSPPRYPPSPP 360
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 30.7 bits (66), Expect = 2.8
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +2
Query: 686 SPPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
SPP PPP P P A P P P PPP
Sbjct: 49 SPPPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPP 89
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 30.7 bits (66), Expect = 2.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 755 GGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
GG GG G G+ G G AG GG GG
Sbjct: 1783 GGMAAGGGEFGGGEGMGGGGMAGGGGGMGGGGG 1815
Score = 29.5 bits (63), Expect = 6.4
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
G GG GG + GG G G G G G GG GG
Sbjct: 1772 GMAGGGGGMGGGGMAAGGGEFGGGEGMGGGGMAGGGGGMGGGGGGMGGGG 1821
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +1
Query: 718 PXPXXXPPT*XPPXKPXXXXSXXXPPWXSPXXPTPXPRTQSLPQ 849
P P PP PP P S PP P P P P LP+
Sbjct: 205 PPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSP-PRPLAAKLPE 247
Score = 30.3 bits (65), Expect = 3.6
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 683 RSPPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
R PP PPP P P P PP + P PPP
Sbjct: 210 RPPPSPPPPPPPPSPSPPRPPPPPPPS-PPRPLAAKLPEPPP 250
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.9 bits (64), Expect = 4.8
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +2
Query: 677 SRRSPPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
S +P PPP PY P P PP N A + P P P
Sbjct: 143 SPNAPYPPPPNPPYPPPLYPPPPNPPPPN-APYPPPPYPPPPNP 185
Score = 29.9 bits (64), Expect = 4.8
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +2
Query: 689 PPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
PP PPP P P +P PP N A + P PPP
Sbjct: 177 PPYPPPPNP-PYPPPPNPPYPPPPN-APNPPPPNPPYPPP 214
Score = 29.5 bits (63), Expect = 6.4
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +2
Query: 629 PXLXXXXXEXHRXXXXSRRSPPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPP 805
P L H S P PPP PY P P PP P PP
Sbjct: 73 PCLVSAKCGGHPPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPP 131
Score = 29.1 bits (62), Expect = 8.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 686 SPPXPP-PXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
+PP PP P PY P +P PP N A + P PPP
Sbjct: 113 NPPYPPPPNAPY--PPPPNPPYPPPPN-APYPPSPNAPYPPP 151
>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
Length = 765
Score = 29.5 bits (63), Expect = 6.4
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 794 GGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
GG G GG GG G G G G G GG GG
Sbjct: 659 GGDGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGG 704
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.5 bits (63), Expect = 6.4
Identities = 25/102 (24%), Positives = 31/102 (30%)
Frame = +3
Query: 1017 PNPXXXXALXTXPPPC*XPXPTAXPXPPXAXLXXRCPLSRXXSLXPPPXRLXXPXMSLXP 1196
P P A P P P P P P P + + PPP P P
Sbjct: 96 PTPTPMVAQSVAPTP---PPPPRAPETPSQAPSPPPPPTSPATRAPPPPPPIAPATGGPP 152
Query: 1197 PRXPLXXLSTXXRXXPXLVRRXVVXXRXPPSSPXYXAXPPSP 1322
P P+ + P + V P+ P A PP P
Sbjct: 153 PPPPIAPATGGPPPPPPIAPAATV---PAPAVPLAAASPPPP 191
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 686 SPPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPPXXQ 817
S P PPP P + P+ PP + +P PPP Q
Sbjct: 878 SQPQPPPGNQVNPPMSSQPQ--PPPGNQVNPPMSSQPQPPPGNQ 919
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 686 SPPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPPXXQ 817
S P PPP P + P+ PP + +P PPP Q
Sbjct: 942 SQPQPPPGNQVNPPMSSQPQ--PPPGNQVNPPMSSQPQPPPGNQ 983
>SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)
Length = 348
Score = 29.1 bits (62), Expect = 8.4
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
G+ G G GG GG G G G G G GG GG
Sbjct: 56 GDGDGDDDDGDGNVGDDGGGDGGGCDGGGGDGDGGGGGDGDGGGGGDGGG 105
>SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 29.1 bits (62), Expect = 8.4
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
G+ G G GG GG G G G G G GG GG
Sbjct: 71 GDGDGDDDDGDGNVGDDGGGDGGGCDGGGGDGDGGGGGDGDGGGGGDGGG 120
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 29.1 bits (62), Expect = 8.4
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Frame = +2
Query: 689 PPXPPPXXPYXX---PXAXHPRXXP---PXNRAXXXXXTHRPGPPP 808
P PPP P+ P A HPR P P R H+ PPP
Sbjct: 459 PRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVPPP 504
Score = 29.1 bits (62), Expect = 8.4
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Frame = +2
Query: 689 PPXPPPXXPYXX---PXAXHPRXXPPXN---RAXXXXXTHRPGPPP 808
P PPP P+ P A HPR PP R H PPP
Sbjct: 559 PRVPPPGAPHPRVPPPGAPHPRVPPPGTPHPRVPPPGAPHPKVPPP 604
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +1
Query: 724 PXXXPPT*XPPXKPXXXXSXXXPPWXSPXXPTPXPRTQSLP 846
P PPT PP P PP + P P P T P
Sbjct: 365 PPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPP 405
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +1
Query: 724 PXXXPPT*XPPXKPXXXXSXXXPPWXSPXXPTPXPRTQSLP 846
P PPT PP P PP + P P P T P
Sbjct: 375 PPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPP 415
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,368
Number of Sequences: 59808
Number of extensions: 202254
Number of successful extensions: 1416
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4247130600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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