Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B09
(1336 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 32 0.80
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.4
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 31 1.8
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 2.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 2.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 2.4
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 3.2
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 3.2
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 30 4.2
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 30 4.2
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 30 4.2
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 30 4.2
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 5.6
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 5.6
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 5.6
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 5.6
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 5.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 7.4
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 7.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 9.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 9.8
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 9.8
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 32.3 bits (70), Expect = 0.80
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +3
Query: 1053 PPPC*XPXPTAXPXPPXAXLXXRCPLSRXXSLXPPPXRLXXPXMSLXPPRXPL 1211
PPP P P PP + + P + PPP L P M L PP PL
Sbjct: 1346 PPPSDDLTPVPPPPPPPPTMS-KAPTGVPLPVPPPPP-LFSPSMILPPPPPPL 1396
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 794 GGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
GG G GG GG G G+ G G G GG GG
Sbjct: 78 GGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGG 123
Score = 29.1 bits (62), Expect = 7.4
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
G +GG G GG GG G G+ G G G GG GG
Sbjct: 65 GGGRGGGWGNNGGGGNWGGN-GGGGNGGGGRGGGGGGGGGRGGGGGGRGG 113
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.1 bits (67), Expect = 1.8
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Frame = +2
Query: 680 RRSPPXPPPXXPYXXPXAXHP---RXXPPXNRAXXXXXTH--RPGPPP 808
++ P PPP PY P HP PP + A H PG PP
Sbjct: 45 QQQPNLPPPQQPYEHPAQQHPPQHHSVPPNSFAPPPGQHHPQHPGMPP 92
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.1 bits (67), Expect = 1.8
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGX-YVGGXXXGSGKXXGEGXXAGSGGXXXXXGGP 654
G QGG G GG Y GG G G G G GG GGP
Sbjct: 93 GYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGP 144
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 764 GXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGG 657
G GG +GG G G G G G GG GG
Sbjct: 203 GGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGG 238
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 2.4
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +3
Query: 1020 NPXXXXALXTXPPP---C*XPXPTAXPXPPXAXLXXRCPLSRXXSL-XPPPXRLXXPXMS 1187
+P A + PPP P PT P PP A P R S PPP R P S
Sbjct: 254 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG--GSPPPPRAGSPPPPPPPRGSPPTGS 311
Query: 1188 LXPPR 1202
L PP+
Sbjct: 312 LPPPQ 316
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 2.4
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +3
Query: 1020 NPXXXXALXTXPPP---C*XPXPTAXPXPPXAXLXXRCPLSRXXSL-XPPPXRLXXPXMS 1187
+P A + PPP P PT P PP A P R S PPP R P S
Sbjct: 275 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG--GSPPPPRAGSPPPPPPPRGSPPTGS 332
Query: 1188 LXPPR 1202
L PP+
Sbjct: 333 LPPPQ 337
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 2.4
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +3
Query: 1020 NPXXXXALXTXPPP---C*XPXPTAXPXPPXAXLXXRCPLSRXXSL-XPPPXRLXXPXMS 1187
+P A + PPP P PT P PP A P R S PPP R P S
Sbjct: 260 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG--GSPPPPRAGSPPPPPPPRGSPPTGS 317
Query: 1188 LXPPR 1202
L PP+
Sbjct: 318 LPPPQ 322
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGGPXXXP 642
G GG G GG Y GG G G G +G GG P P
Sbjct: 253 GYSSGGSSGGGYSTGGGGG-YAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = -3
Query: 806 GEXQGGXXXXXXXXGXXGGXYVGGXXXGSGKXXGEGXXAGSGGXXXXXGGPXXXP 642
G GG G GG Y GG G G G +G GG P P
Sbjct: 253 GYSSGGSSGGGYSTGGGGG-YAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 764 GXXGGXYVGGXXXGSGKXXGEGXXAGSGG 678
G GG Y GG G G+ G G GS G
Sbjct: 46 GGGGGGYGGGGYGGGGRGGGRGGSNGSAG 74
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +3
Query: 1053 PPPC*XPXPTAXPXPPXAXLXXRCPLSRXXSLXPPPXRLXXPXMSLXPPRXP 1208
PPP P P P PP L PPP L P PP P
Sbjct: 89 PPPF-MPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVP 139
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +3
Query: 1053 PPPC*XPXPTAXPXPPXAXLXXRCPLSRXXSLXPPPXRLXXPXMSLXPPRXP 1208
PPP P P P PP L PPP L P PP P
Sbjct: 112 PPPF-MPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVP 162
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +3
Query: 1053 PPPC*XPXPTAXPXPPXAXLXXRCPLSRXXSLXPPPXRLXXPXMSLXPPRXP 1208
PPP P P P PP L PPP L P PP P
Sbjct: 362 PPPF-MPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVP 412
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.5 bits (63), Expect = 5.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 683 RSPPXPPPXXPYXXPXAXHPRXXPP 757
+SPP PPP P P + P PP
Sbjct: 487 KSPPPPPPLPPIATPSSVPPPPPPP 511
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 689 PPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
PP PPP P+ P H PP + P PPP
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVP------PPPPP 799
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 689 PPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
PP PPP P+ P H PP + P PPP
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVP------PPPPP 799
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Frame = +2
Query: 680 RRSPPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRP------GPPPXXQ 817
++ PP PPP Y P +P P + A RP PPP Q
Sbjct: 129 QQQPPPPPPPPHYPPPPPHYPPPPPAPHSAYIDHSAPRPAYIEHSAPPPQPQ 180
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.5 bits (63), Expect = 5.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 683 RSPPXPPPXXPYXXPXAXHPRXXPP 757
+SPP PPP P P + P PP
Sbjct: 494 KSPPPPPPLPPIATPSSVPPPPPPP 518
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 686 SPPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
SPP PPP P P A P PP + PPP
Sbjct: 72 SPPLPPPPLPLSNPPA-KPTPPPPPPKPTIRPPPIPASPPP 111
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 686 SPPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
SPP PPP P P A P PP + PPP
Sbjct: 294 SPPLPPPPLPLSNPPA-KPTPPPPPPKPTIRPPPIPASPPP 333
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.1 bits (62), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 698 PPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPPXXQ 817
PPP PY P P+ P +A PGPPP Q
Sbjct: 694 PPPGQPYGPPGGYPPQQQRPPYQAQPY-----PGPPPPQQ 728
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.1 bits (62), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 698 PPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPPXXQ 817
PPP PY P P+ P +A PGPPP Q
Sbjct: 694 PPPGQPYGPPGGYPPQQQRPPYQAQPY-----PGPPPPQQ 728
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 689 PPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
PP PPP P P P PP +R H PPP
Sbjct: 348 PPPPPPRYPSAGPGMYPP---PPPSRPPAPPSGHGMIPPP 384
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 689 PPXPPPXXPYXXPXAXHPRXXPPXNRAXXXXXTHRPGPPP 808
PP PPP P P P PP +R H PPP
Sbjct: 358 PPPPPPRYPSAGPGMYPP---PPPSRPPAPPSGHGMIPPP 394
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 764 GXXGGXYVGGXXXGSGKXXGEGXXAGSGG 678
G GG Y GG G G G G G GG
Sbjct: 99 GGGGGGYGGGHGGGHGGAVGGGYGGGGGG 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,985
Number of Sequences: 27780
Number of extensions: 170909
Number of successful extensions: 1072
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3746404080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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