Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B08
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   134   2e-32
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   134   2e-32
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    33   0.054
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  134 bits (323), Expect = 2e-32
 Identities = 70/119 (58%), Positives = 78/119 (65%)
 Frame = +1

Query: 142 LGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVXADRDEASPYAAML 321
           +GPQ   G  VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKV  DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 322 AAQDVAEKCKTLGHNGLAHKAPCYWWKQNXDPWXXXXXXXXXXXXRSSMKIGRIEDVTP 498
           AAQD A KCK +G   L  K           P             R+ M+IGRIEDVTP
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTP-GPGAQAALRALARAGMRIGRIEDVTP 122



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 31/67 (46%), Positives = 38/67 (56%)
 Frame = +2

Query: 350 KLLXITALHIKLRATGGNKTKTPGSWCSVCTSGSXLVQV*RLAALKMSPPXPSDSTRXXG 529
           K + ITALHIK+RATGG  TKTPG              + R+  ++   P P+DSTR  G
Sbjct: 74  KEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGM-RIGRIEDVTPIPTDSTRRKG 132

Query: 530 GRXGRXL 550
           GR GR L
Sbjct: 133 GRRGRRL 139


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  134 bits (323), Expect = 2e-32
 Identities = 70/119 (58%), Positives = 78/119 (65%)
 Frame = +1

Query: 142 LGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVXADRDEASPYAAML 321
           +GPQ   G  VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKV  DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 322 AAQDVAEKCKTLGHNGLAHKAPCYWWKQNXDPWXXXXXXXXXXXXRSSMKIGRIEDVTP 498
           AAQD A KCK +G   L  K           P             R+ M+IGRIEDVTP
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTP-GPGAQAALRALARAGMRIGRIEDVTP 122



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 31/67 (46%), Positives = 38/67 (56%)
 Frame = +2

Query: 350 KLLXITALHIKLRATGGNKTKTPGSWCSVCTSGSXLVQV*RLAALKMSPPXPSDSTRXXG 529
           K + ITALHIK+RATGG  TKTPG              + R+  ++   P P+DSTR  G
Sbjct: 74  KEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGM-RIGRIEDVTPIPTDSTRRKG 132

Query: 530 GRXGRXL 550
           GR GR L
Sbjct: 133 GRRGRRL 139


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 299  RHPTLLCWRHRM*XRNAKLLXITALHIKLRATGGNKTKTPGSWCSVC 439
            ++ TLL  RH +  R+A     T +  +LRATGG + KT G    VC
Sbjct: 1339 KNSTLLWERHPIAMRSAIKTHNTIMRRQLRATGGYEVKTEGDAFMVC 1385


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 244 ETIARVTGGMKVXADRDEASPYAAMLAAQDVAEK 345
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +3

Query: 696 PXSXXXGXXXPPPXPPXXFXXXXXPXXXPXXXPXXPXXXXXPPXXXXXP 842
           P S   G    PP PP        P   P   P  P     PP     P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,913
Number of Sequences: 5004
Number of extensions: 33109
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)