Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B08
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 145 4e-35
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 136 2e-32
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 136 3e-32
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 48 1e-05
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 3.8
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 29 6.6
11_06_0610 - 25449085-25453284 29 6.6
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 145 bits (352), Expect = 4e-35
Identities = 78/132 (59%), Positives = 88/132 (66%)
Frame = +1
Query: 103 RKNKVAKEXVQVTLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVX 282
+K + KE VTLGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKV
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 283 ADRDEASPYAAMLAAQDVAEKCKTLGHNGLAHKAPCYWWKQNXDPWXXXXXXXXXXXXRS 462
ADRDE+SPYAAMLA+QDVA++CK LG L K + P RS
Sbjct: 86 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTP-GPGAQSALRALARS 144
Query: 463 SMKIGRIEDVTP 498
MKIGRIEDVTP
Sbjct: 145 GMKIGRIEDVTP 156
Score = 62.5 bits (145), Expect = 4e-10
Identities = 34/70 (48%), Positives = 41/70 (58%)
Frame = +2
Query: 341 RNAKLLXITALHIKLRATGGNKTKTPGSWCSVCTSGSXLVQV*RLAALKMSPPXPSDSTR 520
+ K L ITALHIKLRATGGNKTKTPG + ++ ++ P P+DSTR
Sbjct: 105 QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGM-KIGRIEDVTPVPTDSTR 163
Query: 521 XXGGRXGRXL 550
GGR GR L
Sbjct: 164 RKGGRRGRRL 173
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 136 bits (330), Expect = 2e-32
Identities = 74/129 (57%), Positives = 84/129 (65%)
Frame = +1
Query: 103 RKNKVAKEXVQVTLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVX 282
+K + KE VTLGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKV
Sbjct: 5 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63
Query: 283 ADRDEASPYAAMLAAQDVAEKCKTLGHNGLAHKAPCYWWKQNXDPWXXXXXXXXXXXXRS 462
ADRDE+SPYAAMLA+QDVA++CK LG L K + P RS
Sbjct: 64 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTP-GPGAQSALRALARS 122
Query: 463 SMKIGRIED 489
MKIGRI D
Sbjct: 123 GMKIGRIAD 131
Score = 56.8 bits (131), Expect = 2e-08
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Frame = +2
Query: 341 RNAKLLXITALHIKLRATGGNKTKTPG--SWCSVCTSGSXLVQV*RLAALKMS------- 493
+ K L ITALHIKLRATGGNKTKTPG + ++ +++ R+A +S
Sbjct: 83 QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVLSIFCHTED 142
Query: 494 -PPXPSDSTRXXGGRXGRXL 550
P P+DSTR GGR GR L
Sbjct: 143 VTPVPTDSTRRKGGRRGRRL 162
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 136 bits (328), Expect = 3e-32
Identities = 74/127 (58%), Positives = 83/127 (65%)
Frame = +1
Query: 103 RKNKVAKEXVQVTLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVX 282
RK + KE VTLGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKV
Sbjct: 4 RKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62
Query: 283 ADRDEASPYAAMLAAQDVAEKCKTLGHNGLAHKAPCYWWKQNXDPWXXXXXXXXXXXXRS 462
ADRDE+SPYAAMLA+QDVA++CK LG L K + P RS
Sbjct: 63 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTP-GPGAQSALRALARS 121
Query: 463 SMKIGRI 483
MKIGRI
Sbjct: 122 GMKIGRI 128
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 497 PXPSDSTRXXGGRXGRXL 550
P P+DSTR GGR GR L
Sbjct: 182 PVPTDSTRRKGGRRGRRL 199
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 259 VTGGMKVXADRDEASPYAAMLAAQDVAEKCK 351
V GGMK+ AD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/92 (22%), Positives = 22/92 (23%), Gaps = 2/92 (2%)
Frame = +3
Query: 603 PXPPPXXXXXXXXXXXXXXPXXXXXXXXXXXPXSXXXGXXXPPPXPPXXF--XXXXXPXX 776
P PPP P P S PPP PP P
Sbjct: 545 PPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPP 604
Query: 777 XPXXXPXXPXXXXXPPXXXXXPXXXXXLLXXP 872
P P P PP P +L P
Sbjct: 605 PPPPPPILPNRSVPPPPPPPPPLPNHSVLPPP 636
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 148 PQHLVGXTVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 279
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Frame = +2
Query: 704 PXXXXXXPPPXXPXXXXPXPXXS---XXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P PPP P P P S P P P PP PP S P
Sbjct: 1145 PPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPP 1201
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Frame = +2
Query: 704 PXXXXXXPPPXXPXXXXPXPXXS---XXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P PPP P P P S P P P PP PP S P
Sbjct: 1177 PPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPP 1233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,589
Number of Sequences: 37544
Number of extensions: 322640
Number of successful extensions: 839
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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