Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B08
(884 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) 130 2e-30
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 32 0.54
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 28 8.7
>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
Length = 543
Score = 130 bits (313), Expect = 2e-30
Identities = 72/115 (62%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Frame = +1
Query: 142 LGPQHL-VGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVXADRDEASPYAAM 318
LG +H+ G VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKV ADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246
Query: 319 LAAQDVAEKCKTLGHNGLAHKAPCYWWKQNXDPWXXXXXXXXXXXXRSSMKIGRI 483
LAAQDVA +CK +G L K + P RS MKIGRI
Sbjct: 247 LAAQDVAARCKEIGITALHIKLRATGGNKTKTP-GPGAQSALRALARSGMKIGRI 300
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 32.3 bits (70), Expect = 0.54
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +2
Query: 704 PXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPP 844
P PPP P P P S P P P PP PP
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPP 412
Score = 32.3 bits (70), Expect = 0.54
Identities = 16/57 (28%), Positives = 16/57 (28%)
Frame = +2
Query: 695 PXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P P PPP P P P P P P PP PP P
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/57 (28%), Positives = 16/57 (28%)
Frame = +2
Query: 695 PXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P P PPP P P P P P P PP PP P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/54 (27%), Positives = 15/54 (27%)
Frame = +2
Query: 704 PXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P PPP P P P P P P PP PP P
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAP 420
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +2
Query: 725 PPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
PPP P P P P P P PP PP P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPP 412
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/58 (25%), Positives = 17/58 (29%)
Frame = +2
Query: 692 APXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
+P P PP P P P P P P PP PP + P
Sbjct: 364 SPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +1
Query: 688 PXXXLPXXXXXXPPPXXPXXXSXXPXXLXXXXXXXPXXPXXPXXPPXXXXPP 843
P P PPP P S P P P P PP PP
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +2
Query: 695 PXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P P PP P P P P P P PP PP P
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPP 423
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +2
Query: 695 PXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P P PPP P P P P P PP PP P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +2
Query: 695 PXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P P PPP P P P P P P PP P P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +2
Query: 695 PXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P P PPP P P P P P PP PP P
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +2
Query: 695 PXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P P PPP P P P P P PP PP P
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPP 429
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +2
Query: 695 PXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPPXXXXSXP 865
P P PP P P P P P P PP PP P
Sbjct: 376 PSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 692 APXFPXXXXXXPPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPP 823
AP P PPP P P P + P P P PP
Sbjct: 146 APYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPP 189
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Frame = +2
Query: 692 APXFPXXXXXXPPPXXPXXXXP--XPXXSXXPXXXXXXPXXXPXPPXXXXXPP 844
AP P PPP P P P + P P P PP PP
Sbjct: 138 APYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPP 190
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +2
Query: 725 PPPXXPXXXXPXPXXSXXPXXXXXXPXXXPXPPXXXXXPP 844
PPP P P S P P P PP PP
Sbjct: 716 PPPPPGCAGLPPPPPSPQPGCAGLPPPPPPPPPGCAGLPP 755
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,036,513
Number of Sequences: 59808
Number of extensions: 311702
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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