Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B08
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   154   7e-38
CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ...    29   4.4  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  154 bits (374), Expect = 7e-38
 Identities = 80/132 (60%), Positives = 90/132 (68%)
 Frame = +1

Query: 103 RKNKVAKEXVQVTLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVX 282
           RK K  +E   V+LGPQ   G  +FGVAHIFASFNDTFVH+TD+SGRETI RVTGGMKV 
Sbjct: 5   RKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVK 64

Query: 283 ADRDEASPYAAMLAAQDVAEKCKTLGHNGLAHKAPCYWWKQNXDPWXXXXXXXXXXXXRS 462
           ADRDE+SPYAAMLAAQDVA++CK LG N L  K       +   P             R+
Sbjct: 65  ADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTP-GPGAQSALRALARA 123

Query: 463 SMKIGRIEDVTP 498
            MKIGRIEDVTP
Sbjct: 124 GMKIGRIEDVTP 135



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 31/67 (46%), Positives = 37/67 (55%)
 Frame = +2

Query: 350 KLLXITALHIKLRATGGNKTKTPGSWCSVCTSGSXLVQV*RLAALKMSPPXPSDSTRXXG 529
           K L I ALHIKLRATGG +TKTPG              + ++  ++   P PSD TR  G
Sbjct: 87  KQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGM-KIGRIEDVTPIPSDCTRRKG 145

Query: 530 GRXGRXL 550
           GR GR L
Sbjct: 146 GRRGRRL 152


>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
           protein C42C1.4a protein.
          Length = 1259

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 232 LSGRETIARVTGGMKVXADRDEASPYAAMLAAQDVAEKCKTLGHNGLAHKAPCYWWKQ 405
           L G  T  RV+  +K  A   E + Y ++ +A   +E+   L H+GL +    + W+Q
Sbjct: 392 LKGSATGGRVSEAVKAVA---EFACYQSVTSATSTSERLIVLAHDGLKYLEKVHEWEQ 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,160
Number of Sequences: 27780
Number of extensions: 234121
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)