Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B07
         (936 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   30   2.3  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   5.4  
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_47499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 879 PPPPPXXXXGFXFXXPPPP 935
           PPPPP    GF    PPPP
Sbjct: 196 PPPPPPPPPGFPGGAPPPP 214


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 880 PPXPPXXXGVXXFXPPPPP 936
           PP PP   G     PPPPP
Sbjct: 699 PPPPPLLSGTLPMPPPPPP 717



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 880 PPXPPXXXGVXXFXPPPPP 936
           PP PP   G     PPPPP
Sbjct: 741 PPPPPPPPGCAGLPPPPPP 759


>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 880 PPXPPXXXGVXXFXPPPPP 936
           PP PP   GV    PPPPP
Sbjct: 303 PPPPPLPAGVPAPPPPPPP 321


>SB_47499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 283 RARFDDPVTXVPAHFF 236
           R R DDPV  VP HFF
Sbjct: 57  RLRIDDPVGCVPTHFF 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,219,850
Number of Sequences: 59808
Number of extensions: 251850
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2729039029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)