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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B07
         (936 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43150.1 68415.m05358 proline-rich extensin-like family prote...    30   2.5  
At1g61080.1 68414.m06877 proline-rich family protein                   29   5.9  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    28   7.7  

>At2g43150.1 68415.m05358 proline-rich extensin-like family protein
           similar to CRANTZ hydroxyproline-rich glycoprotein
           [Manihot esculenta] gi|7211797|gb|AAF40442; similar to
           extensin gi|1165322|gb|AAB53156; contains proline-rich
           extensin domains, INTERPRO:IPR002965
          Length = 212

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/85 (18%), Positives = 26/85 (30%)
 Frame = +2

Query: 680 PPPXXKXXXKKXFFXGXXXXXXSPXXGXPXXXXXKPXXTXPXXFFFFFXPXPGGXXXXXF 859
           PPP  K      ++        SP           P  + P  +++   P P       +
Sbjct: 125 PPPPVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKSPPPPY 184

Query: 860 FXAXKXXPPXPPGXXGFXFFXPPPP 934
             +    P   P    + +  PPPP
Sbjct: 185 LYSSPPPPVKSPPPPVYIYASPPPP 209



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/85 (18%), Positives = 26/85 (30%)
 Frame = +2

Query: 680 PPPXXKXXXKKXFFXGXXXXXXSPXXGXPXXXXXKPXXTXPXXFFFFFXPXPGGXXXXXF 859
           PPP  K      ++        SP           P  + P  +++   P P       +
Sbjct: 61  PPPPVKSPPPPYYYHSPPPPVKSPPPPYVYSSPPPPVKSPPPPYYYHSPPPPVKSPPPPY 120

Query: 860 FXAXKXXPPXPPGXXGFXFFXPPPP 934
           +      PP       + +  PPPP
Sbjct: 121 YY-HSPPPPVKSPPPPYYYHSPPPP 144


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 880 PPXPPXXXGVXXFXPPPPP 936
           PP PP    +  F PPPPP
Sbjct: 460 PPPPPAVMPLKHFAPPPPP 478



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 880 PPXPPXXXGVXXFXPPPPP 936
           PP PP   G     PPPPP
Sbjct: 536 PPPPPPPPGTAAAPPPPPP 554



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 880 PPXPPXXXGVXXFXPPPPP 936
           PP PP   G     PPPPP
Sbjct: 549 PPPPPPPPGTQAAPPPPPP 567


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 879 PPPPPXXXXGFXFXXPPPP 935
           PPPPP     + +  PPPP
Sbjct: 398 PPPPPPPPPPYVYPSPPPP 416



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 879 PPPPPXXXXGFXFXXPPPP 935
           PPPPP     + +  PPPP
Sbjct: 413 PPPPPPSPPPYVYPPPPPP 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,297,574
Number of Sequences: 28952
Number of extensions: 203372
Number of successful extensions: 1117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2236853040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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