Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B06
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr... 129 6e-31
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 28 2.1
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 27 3.6
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 6.3
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 6.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 6.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 6.3
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 26 8.4
>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 129 bits (311), Expect = 6e-31
Identities = 62/110 (56%), Positives = 78/110 (70%)
Frame = +1
Query: 562 GRTLKGQGLLKTPERAAKAMLFFTKGYXQSLEEVLNNAIFDEDTDEMVVVKDIEMFSMCE 741
G + QGLL TPER AKAML+FTKGY Q+L EV+N A+F ED +EMV+V+DI++FS+CE
Sbjct: 67 GEDPERQGLLGTPERYAKAMLYFTKGYEQNLTEVINEAVFQEDHEEMVIVRDIDVFSLCE 126
Query: 742 HHLVPFYGKVSIGYLPQGXILGLSNWPGSWKYSPAGLQVXXRLTXXIAIA 891
HHLVPF GK+ IGY+P+ +LGLS LQV RLT +A A
Sbjct: 127 HHLVPFIGKIHIGYIPRKRVLGLSKLARIANMFSRRLQVQERLTKQVAQA 176
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 507 EALLPDMANSYRLLLTGLGEDPERAGAL 590
E + ++N+ +L LGEDPER G L
Sbjct: 49 EEKVKKISNAISTILECLGEDPERQGLL 76
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +3
Query: 333 VGKYKKAPEALKSFNLADAE-SELEVPGTPMTPRTSTTPGHENCTFHHDLELDHRPPTRE 509
+GK + K + +A+ ++ +P + GH FHH++ + P
Sbjct: 212 IGKPYIKVDPKKVIGIVEADYGDITCANSPQDETSQAIAGHLVDFFHHEVSVGRLPKNLH 271
Query: 510 ALLPDMANSYRLLLTGLGEDP 572
L + N ++ GL P
Sbjct: 272 PLQSGIGNIANAIIGGLAHSP 292
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 659 SSKLXSYPFVKKSIALAARSGVFKSPCPFRVL 564
SS YP++++ I + + F+SPC F L
Sbjct: 244 SSVHLKYPYLQQCIVIHPKYEAFRSPCSFAYL 275
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -2
Query: 380 QVKALQGFWSFFVFTNERALLRSVTVLFLLGYRITYGSRTDATY----QRRWRHCRFRVQ 213
Q A G FFV N +++ +T LF+ Y RT + + QR W R +++
Sbjct: 1182 QTNASSGNAMFFVLFNLVSMIYILT-LFIAIIISNYAERTGSAFFTAEQRAWLELRRKIK 1240
Query: 212 IFSVXRRPCL 183
+RP +
Sbjct: 1241 SMRPSKRPAI 1250
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 321 KGSFVGKYKKAPEALKSFNLADAESELEVPGTPMTPRTSTT 443
K S K KKA ++K + D + + +PG+ TP+ S+T
Sbjct: 1384 KASAKNKGKKA-SSVKKQSPEDDDDDFIIPGSSSTPKASST 1423
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 640 YXQSLEEVLNNAIFDEDTDEMVVVKDI 720
Y +SL +LNN I D T+E V KD+
Sbjct: 3007 YYKSLVWMLNNDITDIITEEFAVEKDV 3033
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 427 RGLRPRLV-TRTAPSTMTWNWTTDRPPGRRCYRTWLTHTGFYSPAW 561
RG+RP + T P+ W P RT +TG +PAW
Sbjct: 794 RGIRPGSISTADGPNVPNWAQGARTPAVANGSRTPAWNTGSRTPAW 839
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 693 RVFIEDGVVQNLFQALXVSFREEEHSFGGTFGRLQEPLPFQ 571
R I V +FQ++ ++R+ HSF G GR FQ
Sbjct: 110 RAQISKTSVSQIFQSMIHNYRDLWHSFKGMCGRNVPATAFQ 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,504,491
Number of Sequences: 5004
Number of extensions: 73630
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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