Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B06
(900 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP c... 65 7e-11
At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP c... 65 7e-11
At1g68380.1 68414.m07811 expressed protein contains Pfam profile... 33 0.26
At3g12970.1 68416.m01616 expressed protein 29 4.2
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma... 29 5.6
At1g28330.3 68414.m03480 dormancy-associated protein, putative (... 29 5.6
At1g28330.2 68414.m03479 dormancy-associated protein, putative (... 29 5.6
At1g28330.1 68414.m03478 dormancy-associated protein, putative (... 29 5.6
At2g02300.1 68415.m00168 F-box family protein / SKP1 interacting... 28 7.3
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ... 28 9.7
>At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP
cyclohydrolase I GI:19909132 from [Arabidopsis
thaliana]; contains Pfam profile: PF01227 GTP
cyclohydrolase I
Length = 466
Score = 64.9 bits (151), Expect = 7e-11
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
Frame = +1
Query: 580 QGLLKTPERAAKAMLFFTKGYXQSLEEVLNNAIFDE-DTDE----------MVVVKDIEM 726
+G+ KTP R AKA+ T+GY Q +++ + +A+F E DE +VVV+D++
Sbjct: 53 EGIKKTPFRVAKALREGTRGYKQKVKDYVQSALFPEAGLDEGVGQAGGVGGLVVVRDLDH 112
Query: 727 FSMCEHHLVPFYGKVSIGYLPQG-XILGLSNWPGSWKYSPAGLQVXXRLTXXIAIA 891
+S CE L+PF+ K IGY+P G +LGLS + LQ RL I A
Sbjct: 113 YSYCESCLLPFHVKCHIGYVPSGQRVLGLSKFSRVTDVFAKRLQDPQRLADDICSA 168
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 586 LLKTPERAAKAMLFFTKGYXQSLEEVLNNAIFDEDTDEMVVVKDIEM--FSMCEHHLVPF 759
L+ TP R K ML F + + N A + + E + ++ M +SMCEHHL+PF
Sbjct: 290 LIATPTRFLKWMLNFQRTNLEMKLNSFNPAKVNGEVKEKRLHCELNMPFWSMCEHHLLPF 349
Query: 760 YGKVSIGY 783
YG V IGY
Sbjct: 350 YGVVHIGY 357
>At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP
cyclohydrolase I GI:19909132 from [Arabidopsis
thaliana]; contains Pfam profile: PF01227 GTP
cyclohydrolase I
Length = 466
Score = 64.9 bits (151), Expect = 7e-11
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
Frame = +1
Query: 580 QGLLKTPERAAKAMLFFTKGYXQSLEEVLNNAIFDE-DTDE----------MVVVKDIEM 726
+G+ KTP R AKA+ T+GY Q +++ + +A+F E DE +VVV+D++
Sbjct: 53 EGIKKTPFRVAKALREGTRGYKQKVKDYVQSALFPEAGLDEGVGQAGGVGGLVVVRDLDH 112
Query: 727 FSMCEHHLVPFYGKVSIGYLPQG-XILGLSNWPGSWKYSPAGLQVXXRLTXXIAIA 891
+S CE L+PF+ K IGY+P G +LGLS + LQ RL I A
Sbjct: 113 YSYCESCLLPFHVKCHIGYVPSGQRVLGLSKFSRVTDVFAKRLQDPQRLADDICSA 168
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 586 LLKTPERAAKAMLFFTKGYXQSLEEVLNNAIFDEDTDEMVVVKDIEM--FSMCEHHLVPF 759
L+ TP R K ML F + + N A + + E + ++ M +SMCEHHL+PF
Sbjct: 290 LIATPTRFLKWMLNFQRTNLEMKLNSFNPAKVNGEVKEKRLHCELNMPFWSMCEHHLLPF 349
Query: 760 YGKVSIGY 783
YG V IGY
Sbjct: 350 YGVVHIGY 357
>At1g68380.1 68414.m07811 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 392
Score = 33.1 bits (72), Expect = 0.26
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Frame = +1
Query: 379 WPMRKVNLKCPERQ*---RRGLRPRLVTRTAPSTMTWNWTTDRPPGRRCYRTWLTHTGFY 549
WP+ K +CP+ +RP L R A T+TW + R R + W + F
Sbjct: 286 WPIFKAYSRCPDEHYIPTLLNMRPSLGLRNANRTLTWTDWSKRRAHPRLFGEWEVNVEFL 345
Query: 550 SPAWGRTLKGQGLLKTPERAAKAMLFFTKGYXQ-SLEEVLNNA 675
W R K E + F + + +L+E+L A
Sbjct: 346 E--WLRMKSVGDCKKNGENKMRLCFLFARKFSSTALDELLRLA 386
>At3g12970.1 68416.m01616 expressed protein
Length = 381
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 181 YKHGRRLTEKI*TRKRQCRHLR*YVASVRDPYVIRYPRRKRTVTLLRRARSLVNTKKLQK 360
Y + +T + T + CR L ++ V DPY+ PR R R R L+ K+L K
Sbjct: 76 YPEEKPITSVVHTAVKPCRRLEMEISGVVDPYLFS-PRAPRCTV---RWRELLGLKRLAK 131
>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
domain-containing protein contains Pfam profiles
PF00612: IQ calmodulin-binding motif, PF02179: BAG
(Apoptosis regulator Bcl-2 protein) domain
Length = 1043
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 567 PPPGR*VEAC-MS*PCPVTTPPWWAVCGPVPG--HGGRCSSR 451
PP +C + P PV PW+ V VPG H G+CSS+
Sbjct: 74 PPHASYAPSCYVHPPFPVGYQPWFDVEKDVPGKHHCGKCSSQ 115
>At1g28330.3 68414.m03480 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 132
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 408 PGTPMTPRTSTTPGHEN 458
PGTP TP T TTP +N
Sbjct: 59 PGTPTTPTTPTTPRKDN 75
>At1g28330.2 68414.m03479 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 132
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 408 PGTPMTPRTSTTPGHEN 458
PGTP TP T TTP +N
Sbjct: 59 PGTPTTPTTPTTPRKDN 75
>At1g28330.1 68414.m03478 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 122
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 408 PGTPMTPRTSTTPGHEN 458
PGTP TP T TTP +N
Sbjct: 59 PGTPTTPTTPTTPRKDN 75
>At2g02300.1 68415.m00168 F-box family protein / SKP1 interacting
partner 3-related contains similarity to SKP1
interacting partner 3 GI:10716951 from [Arabidopsis
thaliana]
Length = 284
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 504 WWAVCGPVPGHGGRCSSR-DQAWSKSSASLAFRALQV 397
++A+C P P H G+ S R D+A K L+ + L +
Sbjct: 101 YFALCDPFPNHNGKMSFRLDKASGKKCVMLSAKKLLI 137
>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 668 TTPSSMKTRTRWWSLRISRCFQCANIIWCRFTERSPSGTCHKXXFW 805
T P +K + L IS + WC ERS TC K +W
Sbjct: 493 TLPYKIKYKHDTHFLTISFGEEVREQEWCEICERSLKDTCTKVFYW 538
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,904,330
Number of Sequences: 28952
Number of extensions: 423761
Number of successful extensions: 1143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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