Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B04
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1197 + 25199614-25199795,25200241-25200308,25200309-252004...    29   6.7  

>08_02_1197 +
           25199614-25199795,25200241-25200308,25200309-25200400,
           25200940-25201019,25201418-25201535,25202371-25202562
          Length = 243

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 111 AMLXAAFKPXVALVLNNWXALQLAVEHGMGAPGGXXXAQLMA 236
           A   AA    + LV   W ALQ+AVE+  G       A  +A
Sbjct: 14  AQAAAALGEGIGLVFGRWTALQMAVENQWGGRDSRAKADQLA 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,402,279
Number of Sequences: 37544
Number of extensions: 188007
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)