Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B04
         (900 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z85987-2|CAI42223.1|  191|Homo sapiens TSR2, 20S rRNA accumulati...    44   6e-04
BC011825-1|AAH11825.1|  191|Homo sapiens TSR2, 20S rRNA accumula...    44   6e-04
BC007699-1|AAH07699.1|  191|Homo sapiens TSR2 protein protein.         44   6e-04

>Z85987-2|CAI42223.1|  191|Homo sapiens TSR2, 20S rRNA accumulation,
           homolog (S. cerevisiae) protein.
          Length = 191

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +3

Query: 123 AAFKPXVALVLNNWXALQLAVEHGMGAPGGXXXAQLMAVYIAXYCVENV-VDRXELAEVI 299
           A F+  V   L  W ALQ+AVE+G G       A+ +   +  Y + N  ++  E+ + +
Sbjct: 10  ALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADLELDEVEDFL 69

Query: 300 EXLMDEXFDTVCHDESPKEIANXXXXXXXXXKEGXHDELR 419
             L+   FDTV  D S  +++          + G    LR
Sbjct: 70  GELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALR 109


>BC011825-1|AAH11825.1|  191|Homo sapiens TSR2, 20S rRNA
           accumulation, homolog (S. cerevisiae) protein.
          Length = 191

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +3

Query: 123 AAFKPXVALVLNNWXALQLAVEHGMGAPGGXXXAQLMAVYIAXYCVENV-VDRXELAEVI 299
           A F+  V   L  W ALQ+AVE+G G       A+ +   +  Y + N  ++  E+ + +
Sbjct: 10  ALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADLELDEVEDFL 69

Query: 300 EXLMDEXFDTVCHDESPKEIANXXXXXXXXXKEGXHDELR 419
             L+   FDTV  D S  +++          + G    LR
Sbjct: 70  GELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALR 109


>BC007699-1|AAH07699.1|  191|Homo sapiens TSR2 protein protein.
          Length = 191

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +3

Query: 123 AAFKPXVALVLNNWXALQLAVEHGMGAPGGXXXAQLMAVYIAXYCVENV-VDRXELAEVI 299
           A F+  V   L  W ALQ+AVE+G G       A+ +   +  Y + N  ++  E+ + +
Sbjct: 10  ALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADLELDEVEDFL 69

Query: 300 EXLMDEXFDTVCHDESPKEIANXXXXXXXXXKEGXHDELR 419
             L+   FDTV  D S  +++          + G    LR
Sbjct: 70  GELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALR 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,931,220
Number of Sequences: 237096
Number of extensions: 1154921
Number of successful extensions: 5861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5861
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)