Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B04
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27990.1 68418.m03371 expressed protein predicted proteins, S...    36   0.028

>At5g27990.1 68418.m03371 expressed protein predicted proteins,
           Saccharomyces cerevisiae and Schizosaccharomyces pombe
          Length = 184

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +3

Query: 132 KPXVALVLNNWXALQLAVEHGMGAPGGXXXAQLMAVYIAXYCVEN---VVDRXELAEVIE 302
           K  + L+L  W A++ AVE+G G       A      +  + +++   V D  +L ++++
Sbjct: 16  KEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDPVKDIEKLGDLLD 75

Query: 303 XLMDEXFDTVCHDESPKEIAN 365
             +DE  +T   D S  E+AN
Sbjct: 76  KGLDE-LNTTAEDGSVDEVAN 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,699,801
Number of Sequences: 28952
Number of extensions: 155190
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)