Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B03
         (986 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 66  VSXPPPPXPPXXPP 107
           V  PPPP P   PP
Sbjct: 733 VKLPPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 66  VSXPPPPXPPXXPP 107
           V  PPPP P   PP
Sbjct: 625 VKLPPPPHPHHQPP 638


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 22  ASPXSGHFLSXFXXLFPXPPPXXPPXXPP 108
           A P +G   + +  L   PP   PP  PP
Sbjct: 163 ALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,347
Number of Sequences: 336
Number of extensions: 1138
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28030343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)