Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B03
(986 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 33 0.36
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 32 0.62
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 31 1.1
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 31 1.9
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 5.8
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 5.8
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 29 7.7
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 33.1 bits (72), Expect = 0.36
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = -3
Query: 933 PXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P PPPP + P + P PPPPPP
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410
Score = 33.1 bits (72), Expect = 0.36
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P P PPPP P P PPPPPP
Sbjct: 380 PPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428
Score = 33.1 bits (72), Expect = 0.36
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P +P PPPP P P PPPPPP
Sbjct: 384 PPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432
Score = 32.7 bits (71), Expect = 0.47
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P P PPPP P P PPPPPP
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPP 415
Score = 32.3 bits (70), Expect = 0.62
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P P PPPP P P PPPPPP
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPP 413
Score = 32.3 bits (70), Expect = 0.62
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P P PPPP P P PPPPPP
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPP 416
Score = 32.3 bits (70), Expect = 0.62
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P P PPP Q P P PPPPPP
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPP 417
Score = 32.3 bits (70), Expect = 0.62
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P P PPPP P P PPPPPP
Sbjct: 379 PPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Score = 32.3 bits (70), Expect = 0.62
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P P PPPP P P PPPPPP
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPP 429
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P P PPP P P PPPPPP
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPP 426
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = -3
Query: 951 PXKXXXPXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P P P PP P P P PPPPPP
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 32.3 bits (70), Expect = 0.62
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPPXG 799
PPPP QA P PPPPPP G
Sbjct: 662 PPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIG 696
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 32.3 bits (70), Expect = 0.62
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
PPPP P K P PPPPPP
Sbjct: 357 PPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPP 389
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
PPPP P P PPPPPP
Sbjct: 347 PPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPP 379
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
PPPP P P PPPPPP
Sbjct: 367 PPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPP 399
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
PPPP P P PPPPPP
Sbjct: 377 PPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPP 409
Score = 28.7 bits (61), Expect = 7.7
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
PPP P P K PPPPPP
Sbjct: 348 PPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPP 380
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 31.5 bits (68), Expect = 1.1
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPPXG 799
PPPP P P PPPPPP G
Sbjct: 292 PPPPPADGSAPAPPPPPPPGGAPPPPPPPPPPPPG 326
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
PPPP P P PPPPPP
Sbjct: 305 PPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPPP 337
Score = 28.7 bits (61), Expect = 7.7
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
PPPP P P PPPPPP
Sbjct: 304 PPPPPPPGGAPPPPPPPPPPPPGDGGAPPPPPP 336
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 31.1 bits (67), Expect = 1.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 42 LPFXLSXVVSXPPPPXPPXXPP 107
LP + +V PPPP PP PP
Sbjct: 674 LPIPIQTMVPPPPPPPPPPPPP 695
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = -3
Query: 927 GXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPPXG 799
G P PPPP P PPPPPP G
Sbjct: 707 GTLPMPPPPPPPPPGCAGLPPPPPSPQPGCAGLPPPPPPPPPG 749
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.3 bits (65), Expect = 2.5
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +3
Query: 507 RGG*GXXXNXGVXGEXXFXXKXGEGGGNRXXGGXGG 614
RGG G G G + G GGG R GG GG
Sbjct: 91 RGGGGRRERGGRGGGGGYGGGGGYGGGGRSYGGGGG 126
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = -3
Query: 903 PPPPXXXXXQAXPXXX-KXPXXXKXXKXPPPPPPXGK 796
PPPP A P P + PPPPP GK
Sbjct: 777 PPPPPPPTKPATPRVPPNIPSRPPGARPTPPPPPPGK 813
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -3
Query: 933 PXGXKPXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPPXG 799
P G PPPP P P PPPPP G
Sbjct: 357 PVGGAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPPGRG 401
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = -3
Query: 918 PXXXXPPPPXXXXXQAXPXXXKXPXXXKXXKXPPPPPP 805
P PPP P P + PPPPPP
Sbjct: 198 PSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPPPPPP 235
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 806 GGGGGGFXXXFXXXGXFXXXGXAXXXXXXGGGGXXXXG 919
GGGGGG + G F G GGGG G
Sbjct: 820 GGGGGGDGGGYGDGGGFGDGGGYADGDGGGGGGGGGGG 857
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,026,454
Number of Sequences: 59808
Number of extensions: 154141
Number of successful extensions: 2307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1736
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2931631446
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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