Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B02
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74027-2|CAA98420.1|  210|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AF324058-1|AAK01419.1|  210|Caenorhabditis elegans Ly-6-related ...    30   2.6  
AF068709-6|AAC19249.1|  319|Caenorhabditis elegans Serpentine re...    28   8.0  

>Z74027-2|CAA98420.1|  210|Caenorhabditis elegans Hypothetical
           protein C13G3.2 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 509 RILLTYFNMISFEYVICICKNVYYNIFQFVKI 604
           R L  Y N +S +YV+C C   Y N  +  ++
Sbjct: 126 RSLPMYSNTVSMDYVVCTCNGDYCNTMEMPEV 157


>AF324058-1|AAK01419.1|  210|Caenorhabditis elegans Ly-6-related
           protein HOT-6 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 509 RILLTYFNMISFEYVICICKNVYYNIFQFVKI 604
           R L  Y N +S +YV+C C   Y N  +  ++
Sbjct: 126 RSLPMYSNTVSMDYVVCTCNGDYCNTMEMPEV 157


>AF068709-6|AAC19249.1|  319|Caenorhabditis elegans Serpentine
           receptor, class t protein27 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 434 YFISSLAV*YNMYIVVFAETRFFQARILLTYFNMISF 544
           Y + +L V Y MY V+F     F ++ L  +FN + F
Sbjct: 153 YGVLTLPVIYGMYFVIFTTPIAFSSKHLTWFFNPLIF 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,855
Number of Sequences: 27780
Number of extensions: 188167
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)