Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A24
         (902 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    30   2.4  
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    29   3.2  
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   3.2  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.6  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.6  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    28   7.4  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.4  
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    28   7.4  
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    28   7.4  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    28   9.7  
At3g50370.1 68416.m05508 expressed protein                             28   9.7  

>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 752 PTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 636
           P   A R RH+ R  +GG+ S  R  R R +  GA RG+
Sbjct: 571 PARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 654 LVRSPVPTLPLTGYLSAFLPSGSVAL 731
           L+R    +LP T Y  +FLPS +VAL
Sbjct: 15  LLRISTASLPATNYFDSFLPSDAVAL 40


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 501 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 599
           K+P  V+R    +FS+G  PL+  +  RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 362  PLPRSLTRCARSFGCGERYQLTQRR 436
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 362  PLPRSLTRCARSFGCGERYQLTQRR 436
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
            profile PF05182: Fip1 motif
          Length = 1192

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -1

Query: 821  GRAERGFVHTAQLGANDLH--RTEIPTA*AMRKRHASRREKGGQVSGKRQGRNR 666
            G      V T   G ND    R+EIP      KRH      G ++   ++GR +
Sbjct: 1000 GEQNGSSVVTGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKRGRTK 1053


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 353 PIRKPPLPARWPIH*CRKNLPHL 285
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 501 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 599
           K+P  V+R    +FS+G  PL+  +  R++S+R
Sbjct: 226 KKPDYVQRVEIKQFSLGDEPLSVRNVERKTSRR 258


>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 475 SCVIXLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAE 302
           S  I + L IT++PP +     + A++P              + N+L P+  R I   AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAE 312

Query: 301 KTSHTSXLNLKHKM 260
           K +HT  LN  +K+
Sbjct: 313 KPTHTDELNFMNKL 326


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 526 GLFTVPGLLLAFCSHVLSCVIXLILWITVLPPLSELIPLAAAER 395
           G +T    L  + S  LS  +    W+++LPPL+ ++  + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 551 LRPPERASQKSTLKSEVAKPDRTIKIPGVS 640
           L PP+ + QK++ +SEV  P  +  I G++
Sbjct: 794 LPPPQESRQKTSFRSEVEHPGPSTSIGGIN 823


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,217,894
Number of Sequences: 28952
Number of extensions: 375816
Number of successful extensions: 963
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)