Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A22
         (980 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    29   0.055
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.68 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   8.4  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 0.055
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 354 PASRPGSCAHPTSARTPSHCRAPQT---RKQKRDVTARRPPSLCTAPRS*RRATRGTPWP 184
           PA+ P S A PT   TPS   +P T   +K+   + + RP    T   S   +   TP P
Sbjct: 211 PAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNITPHGSNTSSLITTPSP 270

Query: 183 A 181
           +
Sbjct: 271 S 271


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
            protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 152  PHPAGRTARRI-FVCGGHVERARACRCGRSE 63
            P   G TAR +  VC G     RA  CGR E
Sbjct: 908  PASGGTTARVVRCVCAGSTGTRRATGCGRVE 938


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 879 PPXXXXPSXPPPXPXXGPHPTPP 947
           PP     +  PP P   P P PP
Sbjct: 165 PPTGFLCNNYPPLPQVPPLPLPP 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,586
Number of Sequences: 336
Number of extensions: 2717
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27823477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)