Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_A22
(980 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 35 0.020
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 33 0.081
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.11
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.19
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.19
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.1
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.0
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 27 4.0
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 27 5.3
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 7.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 9.3
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 9.3
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 34.7 bits (76), Expect = 0.020
Identities = 27/64 (42%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -3
Query: 906 GXRGXXXXGGXRXGXGGVKGXXGRGXXGGA-GXXPXXGXXGGXWXREGAGXXXXG-GGGX 733
G RG GG R G GG G GRG GG G G G R G G G GG
Sbjct: 6 GSRGGR--GGSRGGRGGFNG--GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSS 61
Query: 732 *GRG 721
GRG
Sbjct: 62 GGRG 65
Score = 31.1 bits (67), Expect = 0.25
Identities = 25/65 (38%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = -3
Query: 918 GXGXGXRGXXXXGGXRXGXGGVKGXXGRGXXGGAGXXPXXGXXGG-XWXREGAGXXXXGG 742
G G RG GG G GG G GRG G G G GG R G G G
Sbjct: 9 GGRGGSRGGR--GGFNGGRGGFGG--GRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64
Query: 741 GGX*G 727
GG G
Sbjct: 65 GGAKG 69
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 946 GGVGWGPXXGXGGGXEG-XXXXGGX*AXXGGGEGXXGARGXGGRG 815
GG G G GGG G GG GG G G RG G +G
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG-GAKG 69
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = -2
Query: 946 GGVGWGPXXGXGGGXEGXXXXGGX*AXXGGGEGXXGARGXGGR 818
GG G G GG G GG GG G G G +
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = -2
Query: 931 GPXXGXGGGXEGXXXXGGX*AXXGGGEGXXGARGXGGRG 815
G G GG G G GGG G ARG GGRG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGG--ARG-GGRG 41
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 32.7 bits (71), Expect = 0.081
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 174 SDLLATAFLVWLGVSSVVPYKGKEAVVLSHPA--FAFGFVVLGNAMAFGPTSGAHMNPAV 347
++ L T LV GV S + S + FA+GF + G SG H+NPAV
Sbjct: 315 AEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGISGGHVNPAV 374
Query: 348 TLAAAL 365
T++ A+
Sbjct: 375 TISLAI 380
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.3 bits (70), Expect = 0.11
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -2
Query: 361 AAASVTAGFMCAPDVGPNAIALPSTTNPK-AKAGCDSTTASFPLYGTTELTPSHTRNAVA 185
A++S+T+ + + + +++A STT+ A + +STT++ P T+ T S + A
Sbjct: 130 ASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATP---TSSATSSSLSSTAA 186
Query: 184 SRSETSA 164
S S TS+
Sbjct: 187 SNSATSS 193
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.19
Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = -2
Query: 946 GGVGWGP---XXGXGGGXEGXXXXGGX*AXXGGGEGXXGARGXGGRG 815
GG G GP G GG G GG GGG G G G GG G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG-GPGGHG 269
Score = 29.9 bits (64), Expect = 0.57
Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = -3
Query: 918 GXGXGXRGXXXXGGXRXGXGGVKGXXG--RGXXGGAGXXPXXGXXGGXWXREGAGXXXXG 745
G G G G G GG G G G GG G P G GG G G G
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP--GGFGGGLGGFGGGPGGFG 262
Query: 744 GG 739
GG
Sbjct: 263 GG 264
Score = 29.1 bits (62), Expect = 1.0
Identities = 18/39 (46%), Positives = 18/39 (46%)
Frame = -2
Query: 946 GGVGWGPXXGXGGGXEGXXXXGGX*AXXGGGEGXXGARG 830
GG G GP G GGG G GG GGG G G G
Sbjct: 238 GGFGGGPG-GFGGGLGG---FGGGPGGFGGGPGGHGGPG 272
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Frame = -3
Query: 918 GXGXGXRGXXXXGGXRXGXGGVKGXXGR-GXXGGAGXXPXX--GXXGGXWXREGAGXXXX 748
G G G G G G GG G G GG G P G GG G
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
Query: 747 GGGGX*GRGFG 715
GG G GFG
Sbjct: 252 GGFGGGPGGFG 262
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.19
Identities = 20/72 (27%), Positives = 21/72 (29%)
Frame = +2
Query: 761 PAPSRXHXPPXSPXXGLXPAPPXXPRPXXXXXXXXXXXXXXXXXXPLXPXPXPXXWPPPN 940
PAPS P P G+ P PP P P P P PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL-PPVP 1230
Query: 941 XPLXPXPPXXXP 976
P PP P
Sbjct: 1231 VPTAKAPPVPAP 1242
Score = 26.2 bits (55), Expect = 7.1
Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Frame = +2
Query: 761 PAPSRXHXPPXSPXXGLXPAP-PXXPRPXXXXXXXXXXXXXXXXXXPLXPXPXPXXWPPP 937
P PS P +P G+ P P P P P P P P PP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP--PVPPPSTAPPV 1219
Query: 938 NXPLXPXPPXXXP 976
P PP P
Sbjct: 1220 PTPSAGLPPVPVP 1232
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 679 PPXAHPPXXDXXPEPPPLXPPPXXXXST 762
PP P D P PPP PP ST
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPPQST 251
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = -2
Query: 946 GGVGWGPXXGXGGGXEGXXXXGGX*AXXGGGEGXXGARGXGGRG 815
GG G G GGG G G GG G G+RG G RG
Sbjct: 152 GGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRG--GSRG-GFRG 192
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 761 PAPSRXHXPPXSPXXGLXPAPPXXP 835
PAP+ PP +P G P PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -2
Query: 307 AIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASRSETSARHHRRTQPDEPR 128
+++ S P+ A D+T++S P TTE S T + S + SA T P
Sbjct: 413 SLSKESPVEPEKPALPDATSSSTP---TTENKESWTNQGIKSSQQRSANASPATSPSNQA 469
Query: 127 GVSSS 113
+ +S
Sbjct: 470 SIHAS 474
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 274 AKAGCDSTTASFPLYGTTELTPSHTRNAVASRSETSARHHRRTQPDEPRGVSSSVE 107
+KA + FP+ T + H + + +RS AR RR D+PR S ++
Sbjct: 324 SKAEKLGNSGMFPVNYCTRIYDLHVQKSHETRSLERARSIRRIVSDDPRDYCSPIK 379
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 310 NAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVA 185
N + +T A G T+S YG+T + H RN++A
Sbjct: 513 NVVTTQTTHEEDALIGSSINTSSHQHYGSTLNSTPHRRNSIA 554
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 7.1
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Frame = -2
Query: 370 PCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDS-TTASFPLYGTTELTPSHTRN 194
P + +A+V G A + T K AG S TT P TT+ TP
Sbjct: 524 PGTTSAAVPGGKKSAIEAAAPIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATT 583
Query: 193 AVASRSETSARHHRRTQPDEPRGVSSSVE 107
S T T+P G +++ E
Sbjct: 584 KPTPVSATEEHAAGTTKPAPAAGATATAE 612
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 879 PPXXXXPSXPPPXPXXGPHPTPPS 950
PP PS PP P P PPS
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPS 438
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 679 PPXAHPPXXDXXPEPPPLXPPP 744
PP PP P PP PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 905 PXPXPXXWPPPNXPLXPXPP 964
P P P + PP+ P P PP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 879 GXRXGXGGVKGXXGRGXXGGAGXXPXXGXXGG 784
G R G GG G GRG GG G G
Sbjct: 451 GGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -3
Query: 297 CRAPQTRKQKRDVTARRPPSLCTAPRS*RRATRGTPWPADRRPALATIAAPSRT 136
C + + R +K + PP A R + R P +R P L AAP T
Sbjct: 1246 CFSKEVRLEKYKELSTAPPGAVMARRLMTKDPRREPQYGERVPYLIIAAAPGTT 1299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,553
Number of Sequences: 5004
Number of extensions: 37340
Number of successful extensions: 220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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