Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_A20
(963 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 37 0.004
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.026
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.060
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.10
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 32 0.10
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.24
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.42
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.42
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 0.60
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.74
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.98
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 9.1
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 37.1 bits (82), Expect = 0.004
Identities = 21/47 (44%), Positives = 24/47 (51%)
Frame = -1
Query: 651 GGXGEXXXXGGFXGGEXRGGXXGGXGXPXGXRGGGKKXSKXXXGGXG 511
G G GGF GG RGG GG G G RGGG+ ++ GG G
Sbjct: 10 GRGGSRGGRGGFNGG--RGGFGGGRG---GARGGGRGGARGGRGGRG 51
Score = 33.1 bits (72), Expect = 0.060
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = -1
Query: 651 GGXGEXXXXGGFXGGEX--RGGXXGGXGXPXGXRGGGKKXSKXXXGGXG--PGGXXVV 490
G G GGF GG RGG GG G RGG + GG G GG V+
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKVI 74
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 944 GGXXGGXXXXGGXXXGXXGGGGGG 873
GG GG GG G GGG GG
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGG 42
Score = 25.8 bits (54), Expect = 9.1
Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = -3
Query: 652 GGGGGXXXXGGFXXGXXXGXXKXGXGXPPWXKGGGXKXFQXXXGGX-WARGGXXGXXGXL 476
G GG GGF G G G G GG + + GG RGG G G
Sbjct: 10 GRGGSRGGRGGFNGGR--GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGA 67
Query: 475 K 473
K
Sbjct: 68 K 68
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.026
Identities = 20/72 (27%), Positives = 21/72 (29%)
Frame = +3
Query: 732 PPXPPPXXXXPPPXXXKXKIXFXXXPXXXXPXXXPXXPXHPLXXXXXPPXXPPXXPXPXP 911
P PP PPP P P P P+ P P P P P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP-PMP 198
Query: 912 PXXXPPPXXPPP 947
P PPP P
Sbjct: 199 PKVPPPPLSQAP 210
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +2
Query: 503 PPGPXPPXXXLEXFXPPPLXPXGXPXPPFXPPRXSP-PXKPPXXXXSPXPP 652
P P PP E PP P PP P P P K P S PP
Sbjct: 125 PSAPAPPTPQSE-LRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 871 PPPPPPPXXPXXXPPXXXXPPXXPPXXGPP 960
P P PP P PP P P PP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.034
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 871 PPPPPPPXXPXXXPPXXXXPPXXPPXXGPP 960
PP PPP P P PP PP PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 32.7 bits (71), Expect = 0.079
Identities = 22/78 (28%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Frame = +3
Query: 732 PPXPPPXXXXPPPXXXKXKIXFXXXPXXXXPXXXPXX--PXHPLXXXXXPPXXPPXXPXP 905
PP P P PP P P P P PP PP P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 906 XP-PXXXPPPXXPPPXXP 956
P P PP PP P
Sbjct: 1200 VPKPSVGVPPVPPPSTAP 1217
Score = 31.9 bits (69), Expect = 0.14
Identities = 37/159 (23%), Positives = 39/159 (24%), Gaps = 8/159 (5%)
Frame = +2
Query: 503 PPGPXP----PXXXLEXFXPPPLXPXGXPXPPFXPPRXSPPXKPPXXXXSPXPPXXXXXX 670
PP P P P PP P G P P P +PP P P P
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP-KPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 671 XXXXXAXPXPXFFXXGXFFFXXXPPPXXXXXPPPXXXKXNXFXXXXTXXXAXXXPXXAGX 850
P G P P PP A P +
Sbjct: 1123 VPKPSVAAPPVPVPSGA-----PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
Query: 851 ----PXXXXXXPPXXPPXXPXXXPPXXXXXPPXPPPXXA 955
P PP PP P PP PPP A
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Score = 30.7 bits (66), Expect = 0.32
Identities = 34/141 (24%), Positives = 34/141 (24%), Gaps = 4/141 (2%)
Frame = +1
Query: 550 PPPXPXGGXPPPXXXXPXLXPXKTPPXXXFPXPPPGGXXXXXXAXXXPXXPXFXXXGXFF 729
PPP P P P P P P P P P G
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA-- 1120
Query: 730 XXPXPPXXXXXPP-PXPX---KXKFXFXXXHXXPXPXXXPXXRXTXSXXXXPPPPPPPXX 897
P P PP P P P P P S P P P
Sbjct: 1121 -PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV-PKPSVAAPPVPAPSSGI 1178
Query: 898 PXXXPPXXXXPPXXPPXXGPP 960
P P PP PP PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPP 1199
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Frame = +2
Query: 503 PPGPXPPXXXLEXFXP---PPLXPXGXPXPPFXPPRXSPPXKPPXXXXSPXP 649
PP P P P PP+ PP PP +PP P P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 26.6 bits (56), Expect = 5.2
Identities = 32/137 (23%), Positives = 33/137 (24%), Gaps = 1/137 (0%)
Frame = +1
Query: 550 PPPXPXGGXPPPXXXXPXLX-PXKTPPXXXFPXPPPGGXXXXXXAXXXPXXPXFXXXGXF 726
P P PPP L P PP P P A P
Sbjct: 961 PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSS- 1019
Query: 727 FXXPXPPXXXXXPPPXPXKXKFXFXXXHXXPXPXXXPXXRXTXSXXXXPPPPPPPXXPXX 906
P P PP P P P P + S P PPP P
Sbjct: 1020 -KAPPVPLPSADAPPIPVPSTAP-----PVPIPTSTPPVPKSSSGA--PSAPPPVPAPSS 1071
Query: 907 XPPXXXXPPXXPPXXGP 957
P P PP P
Sbjct: 1072 EIPSIPAPSGAPPVPAP 1088
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 871 PPPPPPPXXPXXXPPXXXXPPXXPPXXGPP 960
PP PPP P P PP P P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
Score = 25.8 bits (54), Expect = 9.1
Identities = 26/136 (19%), Positives = 27/136 (19%)
Frame = +1
Query: 553 PPXPXGGXPPPXXXXPXLXPXKTPPXXXFPXPPPGGXXXXXXAXXXPXXPXFXXXGXFFX 732
PP P P P + P P P P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 733 XPXPPXXXXXPPPXPXKXKFXFXXXHXXPXPXXXPXXRXTXSXXXXPPPPPPPXXPXXXP 912
P P P P P P PP P P P
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Query: 913 PXXXXPPXXPPXXGPP 960
P PP P G P
Sbjct: 1212 PPSTAPPVPTPSAGLP 1227
Score = 25.8 bits (54), Expect = 9.1
Identities = 32/137 (23%), Positives = 32/137 (23%), Gaps = 1/137 (0%)
Frame = +1
Query: 553 PPXPXGGXPPPXXXXPXLXPXKTPPXXXFPXPPPGGXXXXXXAXXX-PXXPXFXXXGXFF 729
PP P PP P P P P P A P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK-----PSV 1166
Query: 730 XXPXPPXXXXXPPPXPXKXKFXFXXXHXXPXPXXXPXXRXTXSXXXXPPPPPPPXXPXXX 909
P P PP P P P P S P PPP P
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAA----GVPPVPPPSEAPPV-PKPSVGVPPVPPPSTAPPVPT 1221
Query: 910 PPXXXXPPXXPPXXGPP 960
P P P PP
Sbjct: 1222 PSAGLPPVPVPTAKAPP 1238
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.060
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 817 PXPXXXPXXRXTXSXXXXPPPPPPPXXPXXXPPXXXXPP 933
P P P PPPPPPP PP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 32.3 bits (70), Expect = 0.10
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +3
Query: 732 PPXPPPXXXXPPPXXXKXKIXFXXXPXXXXPXXXPXXPXHPLXXXXXPPXXPPXXPXPXP 911
PP PPP P P P P P P+ PP PP P
Sbjct: 732 PPPPPPAVIVPTP----------------APAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
Query: 912 PXXXPPP 932
P PPP
Sbjct: 776 PPPPPPP 782
Score = 32.3 bits (70), Expect = 0.10
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 871 PPPPPPPXXPXXXPPXXXXPPXXPPXXGPP 960
PPPPP P P PP P GPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762
Score = 32.3 bits (70), Expect = 0.10
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 550 PPPXPXGGXPPPXXXXPXLXPXKTPPXXXFPXPPP 654
PPP P G PPP P + PP P PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPP 783
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 843 PXHPLXXXXXPPXXPPXXPXPXPPXXXPPPXXPPP 947
P P P P P P P PPP PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 29.5 bits (63), Expect = 0.74
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +3
Query: 492 PXXPPRAHXPPXXXWKXFXPPPFXXGGXPXPXXXXPXXXPX*NPPXXXFPPPPP 653
P PP P PPP G P P P PP PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPP 783
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Frame = +1
Query: 550 PPPXPXGGXPPPXXXXPXLXPXKTP-PXXXFPXPPPGGXXXXXXAXXXPXXPXFXXXGXF 726
PPP P P P P P P PPP G P P G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 727 FXXPXP 744
+ P P
Sbjct: 792 YYAPAP 797
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +1
Query: 763 PPPXPXKXKFXFXXXHXXPXPXXXPXXRXTXSXXXXPPPPPPPXXPXXXPPXXXXPP 933
PPP P P P P PPPPPP PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM-----GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 491 TTXXPPGPXPPXXXLEXFXPPPLXPXGXPXPPFXPPRXSPP 613
T P P PP + PPP P G PP PP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +2
Query: 506 PGPXPPXXXLEXFXPPPLXPXGXPXPPFXPPRXSPPXKPPXXXXSPXPP 652
P P PP + P P+ P P P P PP P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPI-PVPPPAPIMGGP-PPPPPPPGVAGAGPPPP 778
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 817 PXPXXXPXXRXTXSXXXXPPPPPPPXXPXXXPPXXXXPPXXPP 945
P P P + PPPPPP P PP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP-PPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +1
Query: 817 PXPXXXPXXRXTXSXXXXPPPPPPPXXPXXXPPXXXXPPXXPPXXGPP 960
P P T + P PPP P PP PP GPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPP 776
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.10
Identities = 36/153 (23%), Positives = 38/153 (24%), Gaps = 2/153 (1%)
Frame = +2
Query: 503 PPGPXPPXXXLEXFXPPPLXPXGXPXPPFXPPRXSP-PXKPPXXXXSPXPPXXXXXXXXX 679
PP P PP P P P G PP PPR +P + P S
Sbjct: 337 PPPPPPPRSNAAGSIPLP--PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
Query: 680 XXAXPXPXFFXXGXFFFXXXPP-PXXXXXPPPXXXKXNXFXXXXTXXXAXXXPXXAGXPX 856
P G PP P PP A P
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Query: 857 XXXXXPPXXPPXXPXXXPPXXXXXPPXPPPXXA 955
P P P PP PP P P A
Sbjct: 455 IAPPLPAGMPAAPP--LPPAAPAPPPAPAPAPA 485
Score = 27.9 bits (59), Expect = 2.3
Identities = 20/75 (26%), Positives = 21/75 (28%)
Frame = +3
Query: 732 PPXPPPXXXXPPPXXXKXKIXFXXXPXXXXPXXXPXXPXHPLXXXXXPPXXPPXXPXPXP 911
PP PP P + P P P P PP PP P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL-PPAAPAP-- 476
Query: 912 PXXXPPPXXPPPXXP 956
PP P P P
Sbjct: 477 ----PPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 512 PXPPXXXLEXFXPPPLXPXGXPX-PPFXPPRXSPPXKPPXXXXSP 643
P PP + PPL P G P PP P +PP P +P
Sbjct: 448 PLPPSAPIA----PPL-PAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 32.3 bits (70), Expect = 0.10
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 871 PPPPPPPXXPXXXPPXXXXPPXXPPXXGPP 960
PPPPPP P PP PP GPP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPP-AGPP 1910
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.24
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 563 PXGXPXPPFXPPRXSPPXKPPXXXXSPXPP 652
P G P PP PP PP +PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP----PPPPP 30
Score = 31.1 bits (67), Expect = 0.24
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +1
Query: 871 PP--PPPPPXXPXXXPPXXXXPPXXP 942
PP PPPPP P PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.9 bits (64), Expect = 0.56
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 548 PPPLXPXGXPXPPFXPPRXSPPXKPP 625
PP P P P F PP PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 0.98
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 571 GXPPPXXXXPXLXPXKTPPXXXFPXPPPG 657
G PPP P P PP P PPPG
Sbjct: 7 GNPPPPPPPPGFEPPSQPP----PPPPPG 31
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 871 PPPPPPPXXPXXXPPXXXXPPXXPP 945
P PPPP P P PP PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.42
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Frame = +1
Query: 871 PPPPPPPXX---PXXXPPXXXXPPXXPPXXGP 957
P PPPPP P PP PP PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 30.3 bits (65), Expect = 0.42
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 874 PPPPPPXXPXXXPPXXXXPPXXPPXXGPP 960
P PPPP PP P PP PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +2
Query: 506 PGPXPPXXXLEXFXPPPLXPXGXPXPPFXPPRXSPPXKPPXXXXSPXPP 652
P PP P P P P PP S P P +P PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +2
Query: 551 PPLXPXGXPXPPFXPPRXS-PPXKPPXXXXSPXPP 652
PP P P PP PP + PP PP + P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Frame = +2
Query: 503 PPGPXPPXXXLEXFXPPPLX---PXGXPXPPFXPPRXSPPXKPPXXXXS-PXP 649
P PP PPP+ P P P PP PP P S P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Frame = +3
Query: 873 PPXXPPXXPXPXPPXXXPPPXXPP-PXXP 956
PP P P P PPP PP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +2
Query: 593 PPRXSPPXKPPXXXXSPXPPXXXXXXXXXXXAXPXP 700
PP+ S P PP P PP A P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = +3
Query: 843 PXHPLXXXXXPPXX--PPXXPXPXPPXXXPPPXXPPP 947
P HP+ P PP P PP PP PPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPP--PPMSVPPP 1717
Score = 25.0 bits (52), Expect(2) = 1.3
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = +3
Query: 876 PXXPPXXPXPXPPXXXPPPXXPPPXXP 956
P P P P P PPP P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 21.8 bits (44), Expect(2) = 1.3
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 735 PXPPPXXXXPPP 770
P PPP PPP
Sbjct: 1707 PPPPPMSVPPPP 1718
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.42
Identities = 27/107 (25%), Positives = 28/107 (26%)
Frame = -2
Query: 959 GGPXXGGXXGGXXXXGGXXXGXXGGGGGGGXXXXEXVXRXXGXXXGXGXXWXXXKXNFXF 780
GG GG G GGG GG G G G +
Sbjct: 164 GGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGH 223
Query: 779 XGXGGGXXXXXGGXGXXKKXPXXXKXGXXGXXXAXXXXXXPPGGGXG 639
G GGG GG G P G G PGG G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 30.3 bits (65), Expect = 0.42
Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = -1
Query: 648 GXGEXXXXGGFXG-GEXRGGXXGGXGXPXGXRGGGKKXSKXXXGGXGPGG 502
G G GGF G G GG G G P G GG G GPGG
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG------PGGFGGGPGG 246
Score = 30.3 bits (65), Expect = 0.42
Identities = 22/54 (40%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -1
Query: 651 GGXGEXXXX-GGFXGGEX--RGGXXGGXGXPXGXRGG-GKKXSKXXXGGXGPGG 502
GG G GGF GG GG G G P G GG G G GPGG
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect(2) = 0.60
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +1
Query: 736 PXPPXXXXXPPPXPXKXKFXFXXXHXXPXPXXXPXXRXTXSXXXXPPPPPPP 891
P PP PPP P K H PPPPPPP
Sbjct: 905 PTPPP----PPPLPVKTSLN-TFSHPDSVNIVANDTSVAGVMPAFPPPPPPP 951
Score = 23.0 bits (47), Expect(2) = 0.60
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 874 PPPPPPXXP 900
PPPPPP P
Sbjct: 945 PPPPPPPPP 953
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.74
Identities = 23/95 (24%), Positives = 25/95 (26%), Gaps = 5/95 (5%)
Frame = +2
Query: 503 PPGPXPPXXXLEXFX-----PPPLXPXGXPXPPFXPPRXSPPXKPPXXXXSPXPPXXXXX 667
PP P PP +E P G P PP +P P P PP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248
Query: 668 XXXXXXAXPXPXFFXXGXFFFXXXPPPXXXXXPPP 772
P P PPP PP
Sbjct: 249 QSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPP 283
Score = 25.8 bits (54), Expect(2) = 1.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 871 PPPPPPPXXP 900
PPPPPPP P
Sbjct: 238 PPPPPPPTLP 247
Score = 23.8 bits (49), Expect(2) = 0.79
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 871 PPPPPPP 891
PPPPPPP
Sbjct: 189 PPPPPPP 195
Score = 23.8 bits (49), Expect(2) = 0.79
Identities = 10/28 (35%), Positives = 10/28 (35%)
Frame = +1
Query: 874 PPPPPPXXPXXXPPXXXXPPXXPPXXGP 957
P PP P P PP PP P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPP 248
Score = 21.4 bits (43), Expect(2) = 1.0
Identities = 8/23 (34%), Positives = 9/23 (39%)
Frame = +1
Query: 823 PXXXPXXRXTXSXXXXPPPPPPP 891
P P + PPPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPP 243
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 0.98
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -1
Query: 642 GEXXXXGGFXGGEXRGGXXGGXGXPXGXRGGGKKXSKXXXGGXGPGG 502
G G G RGG G G G RGG S+ GG GG
Sbjct: 123 GPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG 169
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = -1
Query: 642 GEXXXXGGFXGGEXRGGXXGGXGXPXGXRGGGKKXSKXXXGGXGPGG 502
G GGF GG RGG G G G GG + S+ G GG
Sbjct: 146 GRGGSRGGF-GGNSRGGF--GGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 651 GGXGEXXXXGGFXGGEXRGGXXGG--XGXPXGXRGGGK 544
GG G GGF GG RGG GG G G RGG +
Sbjct: 152 GGFG-GNSRGGFGGGS-RGGFGGGSRGGSRGGFRGGSR 187
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = -1
Query: 648 GXGEXXXXGGFXGGEXRGGXXGGXGXPXGXRGGGKKXSKXXXGGXGP 508
G G GGF G GG GG G G GG + G P
Sbjct: 446 GGGSRGGRGGFGGRGGFGG-RGGFGGGRGRGRGGARSGNPNRGSVAP 491
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 651 GGXGEXXXXGGFXGGEXRGGXXGGXGXP 568
GG G GGF GG RG G P
Sbjct: 457 GGRGGFGGRGGFGGGRGRGRGGARSGNP 484
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Frame = +2
Query: 503 PPGPXPPXXXLEXFXPPPLXPXGXPXPPFXP-PRXSPPXKP--PXXXXSPXPP 652
PP P P PP+ P G PP P P P P P + PP
Sbjct: 506 PPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPP 558
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,425
Number of Sequences: 5004
Number of extensions: 33082
Number of successful extensions: 514
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -