Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A20
         (963 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 871  PPPPPPP 891
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 871  PPPPPPP 891
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 12/45 (26%), Positives = 12/45 (26%)
 Frame = +3

Query: 807 PXXXXPXXXPXXPXHPLXXXXXPPXXPPXXPXPXPPXXXPPPXXP 941
           P    P   P     P       P  P   P P  P   PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +2

Query: 506 PGPXPPXXXLEXFXPPPLXPXGXPXPPFXPPRXSPPXKPP 625
           PGP P         P        P P   PP   PP  PP
Sbjct: 21  PGPQPSPHQ----SPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +3

Query: 888 PXXPXPXPPXXXPPPXXPPPXXP 956
           P    P  P   PPP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 959 GGPXXGGXXGGXXXXGGXXXGXXGGGGGGG 870
           G    GG   G    G    G   GGGGGG
Sbjct: 23  GSSSAGGVVTGASG-GSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,679
Number of Sequences: 438
Number of extensions: 10099
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)