Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A19
         (893 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S...    99   8e-20
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R...    86   1e-15
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary...    83   9e-15
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei...    81   4e-14
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli...    75   3e-12
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr...    66   9e-10
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary...    63   1e-08
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n...    55   2e-06
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=...    52   3e-05
UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n...    46   0.001
UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, wh...    45   0.002
UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing...    44   0.007

>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
           S30-ubiquitin-like - Suberites domuncula (Sponge)
          Length = 134

 Score =   99 bits (238), Expect = 8e-20
 Identities = 56/131 (42%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
 Frame = +3

Query: 84  QLHXXGXSXHVLDVNGQXSXGQXKXRIRTLAAVGXXXLTLSLCGAPXXXXXXXXXXXXXX 263
           Q+   G + H ++V+ + +  Q K  +     +      LS  G P              
Sbjct: 2   QVFVQGGALHAINVSEETTFNQLKSELVLSEGITVEDQVLSYGGVPLEDDTLVCEIVPEL 61

Query: 264 XXXT--VPLLGGKVXGSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVNVVQT 437
              +  V ++GGKV GSLARAGKV+G TPKVE         GRAKRR+QYNRRFVNVV  
Sbjct: 62  ATLSLAVRVVGGKVHGSLARAGKVRGQTPKVEAQEKKKKKTGRAKRRMQYNRRFVNVVAQ 121

Query: 438 FGRRRGPNSNS 470
           FGRRRGPNSN+
Sbjct: 122 FGRRRGPNSNA 132


>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
           40S ribosomal protein S30 - Homo sapiens (Human)
          Length = 59

 Score = 85.8 bits (203), Expect = 1e-15
 Identities = 40/59 (67%), Positives = 46/59 (77%)
 Frame = +3

Query: 294 KVXGSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 470
           KV GSLARAGKV+G TPKV          GRAKRR+QYNRRFVNVV TFG+++GPN+NS
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59


>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
           Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
           latipes (Medaka fish) (Japanese ricefish)
          Length = 59

 Score = 83.0 bits (196), Expect = 9e-15
 Identities = 39/59 (66%), Positives = 45/59 (76%)
 Frame = +3

Query: 294 KVXGSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 470
           KV GSLARAGKV+G TP V+         GRAKRRIQYNRRFVNVV TFG+++G N+NS
Sbjct: 1   KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59


>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
           30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
           subunit protein 30 - Caenorhabditis elegans
          Length = 130

 Score = 81.0 bits (191), Expect = 4e-14
 Identities = 39/63 (61%), Positives = 45/63 (71%)
 Frame = +3

Query: 282 LLGGKVXGSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVNVVQTFGRRRGPN 461
           LLGGKV GSLARAGKV+  TPKV+         GRA RR+QY RR+VNV    G++RGPN
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPN 127

Query: 462 SNS 470
           SNS
Sbjct: 128 SNS 130


>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
           Magnoliophyta|Rep: 40S ribosomal protein S30 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 62

 Score = 74.5 bits (175), Expect = 3e-12
 Identities = 35/59 (59%), Positives = 42/59 (71%)
 Frame = +3

Query: 291 GKVXGSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVNVVQTFGRRRGPNSN 467
           GKV GSLARAGKV+G TPKV          GRA +R+Q+NRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60


>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
           Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
           Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
           181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
           3700 / NRRL 181))
          Length = 78

 Score = 66.5 bits (155), Expect = 9e-10
 Identities = 36/64 (56%), Positives = 41/64 (64%)
 Frame = +3

Query: 291 GKVXGSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 470
           GKV GSLARAGKVK  TPKVE         GRA +R++Y RRFVNV  T G+R+   SN 
Sbjct: 2   GKVHGSLARAGKVKSATPKVEKQEKKKEPKGRALKRLKYTRRFVNVTMTGGKRK-VRSNP 60

Query: 471 *IYK 482
             YK
Sbjct: 61  ARYK 64


>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
           Eukaryota|Rep: 40S ribosomal protein S30 -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 61

 Score = 62.9 bits (146), Expect = 1e-08
 Identities = 33/60 (55%), Positives = 37/60 (61%)
 Frame = +3

Query: 291 GKVXGSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 470
           GKV GSLARAGKVK  TPKVE         GRA +R+ Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
           Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
           Taurus
          Length = 128

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 40/127 (31%), Positives = 50/127 (39%)
 Frame = +3

Query: 90  HXXGXSXHVLDVNGQXSXGQXKXRIRTLAAVGXXXLTLSLCGAPXXXXXXXXXXXXXXXX 269
           H      H L V GQ    Q K  + +L       L                        
Sbjct: 4   HAQSQELHTLKVTGQEMVAQIKAHVASLEGKDQVLLLAGTPLEDEVTLGQCEVEALSTLE 63

Query: 270 XTVPLLGGKVXGSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVNVVQTFGRR 449
               +LGGKV GSL  AGKV+G TPKV+         G+AKR   YN  FV VV    ++
Sbjct: 64  VVGRMLGGKVHGSLDCAGKVRGQTPKVD--KESKRRWGQAKRGTYYNPCFVKVVPHLKKK 121

Query: 450 RGPNSNS 470
           +G N +S
Sbjct: 122 KGTNVSS 128


>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
           Leishmania|Rep: 40S ribosomal protein S30, putative -
           Leishmania major
          Length = 66

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = +3

Query: 291 GKVXGSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVN 425
           GK+ GSLARAGKVK  TPKV          GRA +R++Y RRF++
Sbjct: 2   GKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLS 46


>UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n=1;
           Canis lupus familiaris|Rep: UPI0000EB4B7C UniRef100
           entry - Canis familiaris
          Length = 104

 Score = 46.4 bits (105), Expect = 0.001
 Identities = 27/56 (48%), Positives = 32/56 (57%)
 Frame = +3

Query: 303 GSLARAGKVKGXTPKVEXXXXXXXXXGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 470
           G  A  GKV+G  PKV          GRAKR IQY+  FV VV TFG ++  N+NS
Sbjct: 50  GVEAPHGKVRGQAPKVAKQEKQKKKTGRAKRWIQYHWHFVTVVPTFG-KKDLNTNS 104


>UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, whole
           genome shotgun sequence; n=6; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_22,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 92

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = +3

Query: 291 GKVXGSLARAGKVKGXTPKVE-XXXXXXXXXGRAKRRIQYNRRFVNVVQTFG----RRRG 455
           GK+ G+LA+AGKV+  TPK+E          GRA +RI +NRRF +          +R+G
Sbjct: 2   GKLHGTLAKAGKVRKQTPKIEKQVRRHKIPKGRAYKRICFNRRFGSAAAAGAGPQQKRKG 61

Query: 456 PN 461
           PN
Sbjct: 62  PN 63


>UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Ribosomal protein S30 containing protein - Tetrahymena
           thermophila SB210
          Length = 80

 Score = 43.6 bits (98), Expect = 0.007
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
 Frame = +3

Query: 291 GKVXGSLARAGKVKGXTPKVE-XXXXXXXXXGRAKRRIQYNRRFV-NVVQTF-GRRRGPN 461
           G++ G+LA+AGKV+  TPKVE          GR+ +RI YNRR+  +++ T   +R+ PN
Sbjct: 2   GRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPN 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,211,589
Number of Sequences: 1657284
Number of extensions: 3818819
Number of successful extensions: 5795
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5791
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)