Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A18
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    89   8e-19
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    89   8e-19
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.096
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.6  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +1

Query: 139 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQ 312
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQ
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQ 74


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +1

Query: 139 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQ 312
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQ
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQ 74


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +1

Query: 691 KPXXPPPLXXFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSPP 849
           K   PPP       P P         P    PPPP         GPP P  PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 26/79 (32%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
 Frame = -2

Query: 794 GGGGXFXXGXKXXPPXPXGXGKXKXXXXGGGXXGFAXXXGGXXKXXGXP-XFXXXXXFFX 618
           GG G F  G    PP P G G        GG  G     GG     G P  F      F 
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGF------GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241

Query: 617 PXXGGGGXXXXRXVSGGGP 561
              GG G        GGGP
Sbjct: 242 GGPGGFGGGLGGF--GGGP 258


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 227 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 117
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,326
Number of Sequences: 5004
Number of extensions: 39627
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)