Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_A18
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 97 2e-20
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 40 0.002
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 40 0.002
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 40 0.002
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 40 0.003
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 40 0.003
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 40 0.003
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 36 0.039
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 33 0.37
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.85
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.85
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 31 1.1
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 1.1
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 1.1
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 31 1.5
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 1.5
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.0
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.6
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 3.4
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 3.4
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 3.4
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 3.4
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 3.4
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 3.4
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 3.4
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 6.0
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 6.0
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 6.0
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 97.1 bits (231), Expect = 2e-20
Identities = 52/98 (53%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Frame = +1
Query: 139 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQXR 318
IEKYYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR+ VRGISIKLQ
Sbjct: 17 IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76
Query: 319 GA*EA*XLCPR--SVCSRXMTSSK*TPNTXDMLXMLDF 426
P +V +TS K +T DML F
Sbjct: 77 ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGF 114
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 40.3 bits (90), Expect = 0.002
Identities = 32/107 (29%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Frame = +1
Query: 541 PPX*GXXGPPPETI-LXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLX 717
PP G PPP + PPPP G P PP P PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 718 XFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXP-XSPPQK 855
P P GG K PPPP P P PP+K
Sbjct: 767 GCPPPPPPPPPGG-----FKGGPPPPPPPGMFAPMAPVIPDYLPPKK 808
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +1
Query: 703 PPPLXXFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSP 846
PPP P G P PPPP GPP P P
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPIT-GGPPPPPPP 732
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 40.3 bits (90), Expect = 0.002
Identities = 32/107 (29%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Frame = +1
Query: 541 PPX*GXXGPPPETI-LXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLX 717
PP G PPP + PPPP G P PP P PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 718 XFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXP-XSPPQK 855
P P GG K PPPP P P PP+K
Sbjct: 767 GCPPPPPPPPPGG-----FKGGPPPPPPPGMFAPMAPVIPDYLPPKK 808
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +1
Query: 703 PPPLXXFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSP 846
PPP P G P PPPP GPP P P
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPIT-GGPPPPPPP 732
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 40.3 bits (90), Expect = 0.002
Identities = 32/107 (29%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Frame = +1
Query: 541 PPX*GXXGPPPETI-LXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLX 717
PP G PPP + PPPP G P PP P PPP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 718 XFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXP-XSPPQK 855
P P GG K PPPP P P PP+K
Sbjct: 350 GCPPPPPPPPPGG-----FKGGPPPPPPPGMFAPMAPVIPDYLPPKK 391
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +1
Query: 703 PPPLXXFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSP 846
PPP P G P PPPP GPP P P
Sbjct: 269 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPIT-GGPPPPPPP 315
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 39.5 bits (88), Expect = 0.003
Identities = 35/123 (28%), Positives = 35/123 (28%), Gaps = 4/123 (3%)
Frame = +1
Query: 535 GXPPX*GXXGPPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXA-KPXXPPP 711
G PP G PPP PPPP G P PP A P PPP
Sbjct: 245 GSPPLAGSGSPPPPPAAGS--PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
Query: 712 ---LXXFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSPPQKXXXXXXXXX 882
P P G PPPP PP SPP
Sbjct: 303 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP-TGSPPTGSPPTGRPPR 361
Query: 883 GGP 891
GGP
Sbjct: 362 GGP 364
Score = 33.1 bits (72), Expect = 0.28
Identities = 26/98 (26%), Positives = 26/98 (26%)
Frame = +1
Query: 598 PPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXPXPXGXGGXXFXPXK 777
PPPP G P PP PPP P P GG P
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPT----GSPPPPPAGGSPPPPRA 294
Query: 778 XXPPPPXXXXXXXFXGPPXPXSPPQKXXXXXXXXXGGP 891
PPPP P PPQ G P
Sbjct: 295 GSPPPPPPPRGSP---PTGSLPPPQAGGSPPPAGTGSP 329
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 39.5 bits (88), Expect = 0.003
Identities = 35/123 (28%), Positives = 35/123 (28%), Gaps = 4/123 (3%)
Frame = +1
Query: 535 GXPPX*GXXGPPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXA-KPXXPPP 711
G PP G PPP PPPP G P PP A P PPP
Sbjct: 266 GSPPLAGSGSPPPPPAAGS--PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
Query: 712 ---LXXFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSPPQKXXXXXXXXX 882
P P G PPPP PP SPP
Sbjct: 324 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP-TGSPPTGSPPTGRPPR 382
Query: 883 GGP 891
GGP
Sbjct: 383 GGP 385
Score = 33.1 bits (72), Expect = 0.28
Identities = 26/98 (26%), Positives = 26/98 (26%)
Frame = +1
Query: 598 PPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXPXPXGXGGXXFXPXK 777
PPPP G P PP PPP P P GG P
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPT----GSPPPPPAGGSPPPPRA 315
Query: 778 XXPPPPXXXXXXXFXGPPXPXSPPQKXXXXXXXXXGGP 891
PPPP P PPQ G P
Sbjct: 316 GSPPPPPPPRGSP---PTGSLPPPQAGGSPPPAGTGSP 350
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 39.5 bits (88), Expect = 0.003
Identities = 35/123 (28%), Positives = 35/123 (28%), Gaps = 4/123 (3%)
Frame = +1
Query: 535 GXPPX*GXXGPPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXA-KPXXPPP 711
G PP G PPP PPPP G P PP A P PPP
Sbjct: 251 GSPPLAGSGSPPPPPAAGS--PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
Query: 712 ---LXXFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSPPQKXXXXXXXXX 882
P P G PPPP PP SPP
Sbjct: 309 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP-TGSPPTGSPPTGRPPR 367
Query: 883 GGP 891
GGP
Sbjct: 368 GGP 370
Score = 33.1 bits (72), Expect = 0.28
Identities = 26/98 (26%), Positives = 26/98 (26%)
Frame = +1
Query: 598 PPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXPXPXGXGGXXFXPXK 777
PPPP G P PP PPP P P GG P
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPT----GSPPPPPAGGSPPPPRA 300
Query: 778 XXPPPPXXXXXXXFXGPPXPXSPPQKXXXXXXXXXGGP 891
PPPP P PPQ G P
Sbjct: 301 GSPPPPPPPRGSP---PTGSLPPPQAGGSPPPAGTGSP 335
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 35.9 bits (79), Expect = 0.039
Identities = 23/83 (27%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Frame = +1
Query: 604 PPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXPXPXGXGGXXFXPXKXX 783
PP K + P F PP PPP+ P P GG P
Sbjct: 53 PPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFG 112
Query: 784 --PPPPXXXXXXXFXGPPXPXSP 846
PPPP PP P +P
Sbjct: 113 APPPPPPPSGLGVAPQPPRPKTP 135
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = +1
Query: 541 PPX*GXXGPPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPP 711
PP G PPP PPPP G G P PP A P PPP
Sbjct: 77 PPGPGGIPPPPPMFAGGIPPPPPMMG----------GIP---PPPPMFGAPPPPPPP 120
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 33.5 bits (73), Expect = 0.21
Identities = 30/103 (29%), Positives = 30/103 (29%)
Frame = -2
Query: 848 GGXXGXGGPXKXXXXXXXGGGGXFXXGXKXXPPXPXGXGKXKXXXXGGGXXGFAXXXGGX 669
GG G GG GGGG G PP P G GGG G GG
Sbjct: 82 GGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGG---GCGGGGGGCGGGCGGGGG 138
Query: 668 XKXXGXPXFXXXXXFFXPXXGGGGXXXXRXVSGGGPXXPX*GG 540
G GGGG GGG GG
Sbjct: 139 GGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGG 181
Score = 31.9 bits (69), Expect = 0.64
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -3
Query: 868 GXXGXFGGGXXGGGAPXXXXPXXPXGXGXXFXGGXXPXPPXP 743
G G GGG GGG G G GG P PP P
Sbjct: 75 GGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPP 116
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -3
Query: 850 GGGXXGGGAPXXXXPXXPXGXGXXFXGGXXPXPPXP 743
GGG GGG G G GG P PP P
Sbjct: 24 GGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPP 59
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 32.7 bits (71), Expect = 0.37
Identities = 25/95 (26%), Positives = 29/95 (30%)
Frame = -2
Query: 848 GGXXGXGGPXKXXXXXXXGGGGXFXXGXKXXPPXPXGXGKXKXXXXGGGXXGFAXXXGGX 669
G GGP + GG G P P G G GGG G++ GG
Sbjct: 284 GNDGQPGGPGQPGGPGQDGGPGTDAAYCPCPPRTPAGGGGGGDFPAGGGGGGYSTGGGGG 343
Query: 668 XKXXGXPXFXXXXXFFXPXXGGGGXXXXRXVSGGG 564
G GGGG +GGG
Sbjct: 344 RADSGGAAGGAGGA--GGYSGGGGGGGGGAAAGGG 376
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.85
Identities = 24/98 (24%), Positives = 27/98 (27%), Gaps = 3/98 (3%)
Frame = +1
Query: 565 PPPETILXXXXPPPPXX---GXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXP 735
PPP + + PPPP G P F P P PP + P
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
Query: 736 XPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSPP 849
P P PPPP P PP
Sbjct: 349 PPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/94 (24%), Positives = 25/94 (26%)
Frame = +1
Query: 565 PPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXPXPX 744
PPP ++ P PP G PP P PP P P
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG--PPGMPGMPPPPPP 322
Query: 745 GXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSP 846
G PPPP PP P P
Sbjct: 323 SRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.85
Identities = 24/98 (24%), Positives = 27/98 (27%), Gaps = 3/98 (3%)
Frame = +1
Query: 565 PPPETILXXXXPPPPXX---GXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXP 735
PPP + + PPPP G P F P P PP + P
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
Query: 736 XPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSPP 849
P P PPPP P PP
Sbjct: 359 PPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/94 (24%), Positives = 25/94 (26%)
Frame = +1
Query: 565 PPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXPXPX 744
PPP ++ P PP G PP P PP P P
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG--PPGMPGMPPPPPP 332
Query: 745 GXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSP 846
G PPPP PP P P
Sbjct: 333 SRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/99 (29%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Frame = -2
Query: 848 GGXXGXGG----PXKXXXXXXXGGGGXFXXGXKXXPPXPXGXGKXKXXXXGGGXXGFAXX 681
GG G GG P GGGG G PP P G G GGG G
Sbjct: 40 GGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG---CGGGGGGCGGGGGG 96
Query: 680 XGGXXKXXGXPXFXXXXXFFXPXXGGGGXXXXRXVSGGG 564
GG G GGG GGG
Sbjct: 97 CGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGG 135
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = -3
Query: 868 GXXGXFGGGXXGGGAPXXXXPXXPXGXGXXFXGGXXPXPPXP 743
G G + GG GGG G G P PP P
Sbjct: 267 GGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPP 308
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/99 (29%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Frame = -2
Query: 848 GGXXGXGG----PXKXXXXXXXGGGGXFXXGXKXXPPXPXGXGKXKXXXXGGGXXGFAXX 681
GG G GG P GGGG G PP P G G GGG G
Sbjct: 40 GGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG---CGGGGGGCGGGGGG 96
Query: 680 XGGXXKXXGXPXFXXXXXFFXPXXGGGGXXXXRXVSGGG 564
GG G GGG GGG
Sbjct: 97 CGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGG 135
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = -3
Query: 868 GXXGXFGGGXXGGGAPXXXXPXXPXGXGXXFXGGXXPXPPXP 743
G G + GG GGG G G P PP P
Sbjct: 267 GGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPPP 308
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/86 (27%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Frame = +1
Query: 601 PPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXX--PPPLXXFFXXPXPXGXGGXXFXPX 774
PP G + G P + PP A PPP P G P
Sbjct: 78 PPGPSGPSGPPVYHNQGPPRGYPPPPPQGADTWRGAPPPAHHGHFGPPGHHFQG----PP 133
Query: 775 KXXPPPPXXXXXXXFXGPPXPXSPPQ 852
+ PP P F GPP P PP+
Sbjct: 134 QHFPPGPPRPH---FPGPPGPHRPPE 156
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/99 (27%), Positives = 28/99 (28%)
Frame = +1
Query: 535 GXPPX*GXXGPPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPL 714
G PP PPP+ P P G P F PP PP
Sbjct: 341 GGPPQGSFGAPPPQQF---HAPSPQSFGGPPPPV---SSAPGNFAPPPQSGPPGAFAPPP 394
Query: 715 XXFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPP 831
F P G GG PPPP GPP
Sbjct: 395 SAFGAPQGPGGPGGYG-------PPPPGGPGAPGSYGPP 426
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/89 (28%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Frame = -2
Query: 851 WGGXXGXGGPXKXXXXXXXG----GGGXFXXGXKXXPPXPXGXGKXKXXXXGGGXXGFAX 684
WGG GGP G GGG + G G GGG G+
Sbjct: 191 WGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGG--GWGQ 248
Query: 683 XXGGXXKXXGXPXFXXXXXFFXPXXGGGG 597
GG G P + P GGGG
Sbjct: 249 QGGGGQGGWGGPQQQQQGGWGGPQQGGGG 277
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/89 (28%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Frame = -2
Query: 851 WGGXXGXGGPXKXXXXXXXG----GGGXFXXGXKXXPPXPXGXGKXKXXXXGGGXXGFAX 684
WGG GGP G GGG + G G GGG G+
Sbjct: 229 WGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGG--GWGQ 286
Query: 683 XXGGXXKXXGXPXFXXXXXFFXPXXGGGG 597
GG G P + P GGGG
Sbjct: 287 QGGGGQGGWGGPQQQQQGGWGGPQQGGGG 315
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/93 (26%), Positives = 27/93 (29%)
Frame = +1
Query: 571 PETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXPXPXGX 750
P+T PPPP + P P KP PPP P P
Sbjct: 433 PKTPTRVAPPPPP--SAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPA 490
Query: 751 GGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSPP 849
P PPPP PP P PP
Sbjct: 491 EVSKSPP----PPPPLPPIATPSSVPPPPPPPP 519
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/89 (28%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Frame = +1
Query: 598 PPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXX-----PXPXGXGGXX 762
PPPP G K P PP P PPP+ P P
Sbjct: 511 PPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPP--PPPIAGLLAANGTNVPIPPPPPPPL 568
Query: 763 FXPXKXXPPPPXXXXXXXFXGPPXPXSPP 849
PPPP GPP P PP
Sbjct: 569 PQNLSGAPPPPPPPPPM-LGGPPPPPPPP 596
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/84 (28%), Positives = 24/84 (28%)
Frame = +1
Query: 598 PPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPPLXXFFXXPXPXGXGGXXFXPXK 777
PPPP G PP KP PPP P P P
Sbjct: 434 PPPPPSAPPTIKFPISTGTSYSSTTPPTTP-KPAPPPPSRIPNPSPSPQPAEVSKSPP-- 490
Query: 778 XXPPPPXXXXXXXFXGPPXPXSPP 849
PPPP PP P PP
Sbjct: 491 --PPPPLPPIATPSSVPPPPPPPP 512
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +1
Query: 703 PPPLXXFFXXPXPXGXGGXXFXPXKXXPPPPXXXXXXXFXGPPXPXSPPQ 852
PPP + P G GG P PPPP P P P+
Sbjct: 70 PPPFDGGYNRPYGGGGGGGYGRPQGYVPPPPPPPTQPEPEPEPRPEPQPE 119
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/89 (30%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Frame = +1
Query: 532 AGXPPX*GXXGPPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXPPP 711
AG PP G PP L PPP G G P PP PPP
Sbjct: 692 AGLPP-----GVPPMFNLNAP-PPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPP 745
Query: 712 L-XXFFXXPXPXGXGGXXFXPXKXXPPPP 795
+ F P G P PPPP
Sbjct: 746 MFQQGFNAGAPPPPFGRGAGPMSSFPPPP 774
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 768 PPXKXXPXPXGXXGXXLXGAPPPXXPPPKXPXXP 869
PP P P G PPP PPP P
Sbjct: 630 PPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGP 663
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/88 (27%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Frame = +1
Query: 598 PPPPXXGXKKXXXWXXXGXPXXFXXPPXXX-AKPXXPPPLXXFFXXPXPXGXGGXXFXPX 774
PPPP G + + P A P PPP P P G
Sbjct: 576 PPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPP-------PPPQSFGMAPISSA 628
Query: 775 KXXPPPPXXXXXXXFXG---PPXPXSPP 849
PPPP G PP P PP
Sbjct: 629 APPPPPPPPPMGLPAVGAGAPPPPPPPP 656
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 768 PPXKXXPXPXGXXGXXLXGAPPPXXPPPKXPXXP 869
PP P P G PPP PPP P
Sbjct: 456 PPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGP 489
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/88 (27%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Frame = +1
Query: 598 PPPPXXGXKKXXXWXXXGXPXXFXXPPXXX-AKPXXPPPLXXFFXXPXPXGXGGXXFXPX 774
PPPP G + + P A P PPP P P G
Sbjct: 402 PPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPP-------PPPQSFGMAPISSA 454
Query: 775 KXXPPPPXXXXXXXFXG---PPXPXSPP 849
PPPP G PP P PP
Sbjct: 455 APPPPPPPPPMGLPAVGAGAPPPPPPPP 482
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = +1
Query: 649 GXPXXFXXPPXXXAKPXXPPPLXXF-FXXPXPXGXGGXXFXPXKXXPP-PPXXXXXXXFX 822
G P PP +P PPP P P G G P + P P
Sbjct: 128 GQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLP 187
Query: 823 GPPXPXSPP 849
GP P PP
Sbjct: 188 GPRGPPGPP 196
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/86 (26%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Frame = -2
Query: 851 WGGXXGXGGPXKXXXXXXXGGGGXFXX-GXKXXPPXPXGXGKXKXXXXGGGXXGFAXXXG 675
WGG GGP G GG G G G G G+ G
Sbjct: 229 WGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 288
Query: 674 GXXKXXGXPXFXXXXXFFXPXXGGGG 597
G G P + P GGGG
Sbjct: 289 GGQGGWGGPQQQQQGGWGGPQQGGGG 314
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/86 (26%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Frame = -2
Query: 851 WGGXXGXGGPXKXXXXXXXGGGGXFXX-GXKXXPPXPXGXGKXKXXXXGGGXXGFAXXXG 675
WGG GGP G GG G G G G G+ G
Sbjct: 191 WGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 250
Query: 674 GXXKXXGXPXFXXXXXFFXPXXGGGG 597
G G P + P GGGG
Sbjct: 251 GGQGGWGGPQQQQQGGWGGPQQGGGG 276
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/86 (26%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Frame = -2
Query: 851 WGGXXGXGGPXKXXXXXXXGGGGXFXX-GXKXXPPXPXGXGKXKXXXXGGGXXGFAXXXG 675
WGG GGP G GG G G G G G+ G
Sbjct: 229 WGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 288
Query: 674 GXXKXXGXPXFXXXXXFFXPXXGGGG 597
G G P + P GGGG
Sbjct: 289 GGQGGWGGPQQQQQGGWGGPQQGGGG 314
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Frame = +1
Query: 541 PPX*GXXGPPPETIL-----XXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXP 705
PP G PPP + PPPP G + P F P P P
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPY---PPFFP 354
Query: 706 PPLXXFFXXPXPXGXGG 756
PP F P GG
Sbjct: 355 PPPPHFMRPSSPPTDGG 371
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Frame = +1
Query: 541 PPX*GXXGPPPETIL-----XXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAKPXXP 705
PP G PPP + PPPP G + P F P P P
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPY---PPFFP 354
Query: 706 PPLXXFFXXPXPXGXGG 756
PP F P GG
Sbjct: 355 PPPPHFMRPSSPPTDGG 371
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = +1
Query: 649 GXPXXFXXPPXXXAKPXXPPPLXXF-FXXPXPXGXGGXXFXPXKXXPP-PPXXXXXXXFX 822
G P PP +P PPP P P G G P + P P
Sbjct: 128 GQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLP 187
Query: 823 GPPXPXSPP 849
GP P PP
Sbjct: 188 GPRGPPGPP 196
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/65 (29%), Positives = 19/65 (29%)
Frame = -2
Query: 848 GGXXGXGGPXKXXXXXXXGGGGXFXXGXKXXPPXPXGXGKXKXXXXGGGXXGFAXXXGGX 669
GG G G GGGG F G G GGG GF GG
Sbjct: 98 GGGGGGGNYGGGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGGGFGDILGGI 157
Query: 668 XKXXG 654
G
Sbjct: 158 GSLIG 162
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +1
Query: 565 PPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAK-PXXPPPLXXF-FXXPX 738
PPP+ PPPP G P PP P PPP + P
Sbjct: 682 PPPQGQQYYGGPPPPGQ-----PYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPP 736
Query: 739 PXGXGGXXFXPXKXXPPPP 795
P G P PPPP
Sbjct: 737 PPQPGHPYQQPYGQMPPPP 755
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +1
Query: 565 PPPETILXXXXPPPPXXGXKKXXXWXXXGXPXXFXXPPXXXAK-PXXPPPLXXF-FXXPX 738
PPP+ PPPP G P PP P PPP + P
Sbjct: 682 PPPQGQQYYGGPPPPGQ-----PYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPP 736
Query: 739 PXGXGGXXFXPXKXXPPPP 795
P G P PPPP
Sbjct: 737 PPQPGHPYQQPYGQMPPPP 755
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -3
Query: 868 GXXGXFGGGXXGGGAPXXXXPXXPXGXGXXFXGGXXPXPPXP 743
G G F G G G P P P G G P P P
Sbjct: 280 GMPGAFPPGQGGPGMPGSFPPGAPGPGGPGMPGSFAPGAPGP 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,602,709
Number of Sequences: 27780
Number of extensions: 354417
Number of successful extensions: 1923
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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