Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A17
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    98   1e-21
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    96   7e-21
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   6.4  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 50/100 (50%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
 Frame = +3

Query: 150 VKAVXCTNCARCVPKXKAIKKFXXXXXXXXXXXXXINDASVYPMFQLPKLYAKLHYCVSC 329
           VK V C NC+R VPK KAIK++             +++ASVY  + +PKLY KL YCVSC
Sbjct: 18  VKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSC 77

Query: 330 AIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 440
           AIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 78  AIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 95.9 bits (228), Expect = 7e-21
 Identities = 47/99 (47%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
 Frame = +3

Query: 153 KAVXCTNCARCVPKXKAIKKFXXXXXXXXXXXXXINDASVYPMFQLPKLYAKLHYCVSCA 332
           K V C NC+R VPK KAIK++             +++ASVY  + +PK+Y KL YCVSCA
Sbjct: 19  KFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCA 78

Query: 333 IHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 440
           IH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 79  IHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 239 RFYDVPXHELFDSLXLWHAPRAVCAXHSFNVTTSMLGAXS 120
           + +DV   +L + + L   P+A+C  +S ++ TS++   S
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,303
Number of Sequences: 5004
Number of extensions: 32508
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)