Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A17
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...    93   2e-19
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    29   6.7  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 43/93 (46%), Positives = 61/93 (65%)
 Frame = +3

Query: 150 VKAVXCTNCARCVPKXKAIKKFXXXXXXXXXXXXXINDASVYPMFQLPKLYAKLHYCVSC 329
           VK + C+NCA+C PK KAIK+F             + +A V+  + LPKLYAK+H+CVSC
Sbjct: 18  VKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSC 77

Query: 330 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 428
           AIH+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 78  AIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -3

Query: 873 PXXXPNXPSPXSXXXGXGRXPNXQTAFPRXXADSLMQKKPSHTSP 739
           P   P  P P       G   N Q   P    D +++K PSH SP
Sbjct: 126 PPPPPPPPPPFKGDHYGGVYQNWQQNGPPPPPDHVLKKVPSHPSP 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,387,957
Number of Sequences: 37544
Number of extensions: 266704
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)