Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A17
         (905 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...   100   1e-21
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)            97   1e-20
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)            97   1e-20
At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase, puta...    28   7.4  
At1g43880.1 68414.m05055 hypothetical protein low similarity to ...    28   7.4  
At3g60200.1 68416.m06726 expressed protein hypothetical proteins...    28   9.8  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score =  100 bits (240), Expect = 1e-21
 Identities = 47/96 (48%), Positives = 58/96 (60%)
 Frame = +3

Query: 150 VKAVXCTNCARCVPKXKAIKKFXXXXXXXXXXXXXINDASVYPMFQLPKLYAKLHYCVSC 329
           VK + C+NC +C PK KAIK+F             + +ASVY  + LPKLYAK  YCVSC
Sbjct: 18  VKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSC 77

Query: 330 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 437
           AIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 78  AIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 46/96 (47%), Positives = 57/96 (59%)
 Frame = +3

Query: 150 VKAVXCTNCARCVPKXKAIKKFXXXXXXXXXXXXXINDASVYPMFQLPKLYAKLHYCVSC 329
           V  + C+NC +C PK KAIK+F             + +ASVY  + LPKLYAK  YCVSC
Sbjct: 18  VNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSC 77

Query: 330 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 437
           AIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 78  AIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 46/96 (47%), Positives = 57/96 (59%)
 Frame = +3

Query: 150 VKAVXCTNCARCVPKXKAIKKFXXXXXXXXXXXXXINDASVYPMFQLPKLYAKLHYCVSC 329
           V  + C+NC +C PK KAIK+F             + +ASVY  + LPKLYAK  YCVSC
Sbjct: 18  VNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSC 77

Query: 330 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 437
           AIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 78  AIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113


>At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GB:AAF26356
           [GI:6715257][Phaseolus vulgaris]
          Length = 599

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 309 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAV 434
           L YC S  + S+V R  +     + TPP  +FP+  S   A+
Sbjct: 32  LSYCSSLPMASRVTRKLNVSSA-LHTPPALHFPKQSSNSPAI 72


>At1g43880.1 68414.m05055 hypothetical protein low similarity to
           protective antigen [Streptococcus pyogenes] GI:8996050,
           fibrinogen-binding protein [Streptococcus equi]
           GI:3093478
          Length = 409

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 698 LTPXIAFILCXRXQGEVWEGFF 763
           L P  AFILC     + WEGFF
Sbjct: 385 LVPGKAFILCSFKYLDAWEGFF 406


>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
           At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
          Length = 305

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 309 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 440
           L    S A+ + V  N+SKK      PP   FPR +S P   +R
Sbjct: 26  LSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS-PYVTRR 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,526,076
Number of Sequences: 28952
Number of extensions: 193318
Number of successful extensions: 351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)