Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A16
         (882 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    23   3.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   5.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.7  

>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/52 (19%), Positives = 26/52 (50%)
 Frame = +2

Query: 452 PDVEKNATXLREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYD 607
           PD ++    L + L++      ++ +++ KKV   +    +++  ++ A YD
Sbjct: 53  PDADELKRVLPDALKSDCAKCSEKQKEMTKKVIHFLSHNKQQMWKELTAKYD 104


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 170 RRDAPDFFKDIEH 208
           RR AP  F+DI+H
Sbjct: 84  RRKAPQSFEDIQH 96


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 495 CSFSRRXVAFFSTSGWALRSSSAVRSMFCLDCSK 394
           C    +  A  ST    LR+ S  +   C+DC+K
Sbjct: 252 CRICGKSYARPSTLKTHLRTHSGEKPYRCIDCNK 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,291
Number of Sequences: 336
Number of extensions: 1447
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)