Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A15
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           58   9e-09
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 55   6e-08
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              55   6e-08
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                31   1.2  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 38/154 (24%), Positives = 58/154 (37%)
 Frame = +2

Query: 206 GGXXXRXXEXFXXXAXXXGXGSFXXAWVLXXLKAXRXRGXXXXXALWXFEXXXXXVTXXD 385
           G    R  E +   A      ++  +W L   +  R +G         F+      T  D
Sbjct: 169 GQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLD 228

Query: 386 APGXXXFXXXXXXGXSQAXCAVLXVAAGTGXFEAGISKNGXTRXXALLAFXLGVXXLXVG 565
           APG   F      G +QA   VL ++A  G FE G  + G TR  A+LA   GV  L + 
Sbjct: 229 APGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVIL 288

Query: 566 VXXMXSTEPPYSXPXFXXXXXXVSSYXXXXGXHP 667
           V  M      ++   +      ++ +    G +P
Sbjct: 289 VNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 29/59 (49%), Positives = 29/59 (49%)
 Frame = +2

Query: 260 GXGSFXXAWVLXXLKAXRXRGXXXXXALWXFEXXXXXVTXXDAPGXXXFXXXXXXGXSQ 436
           G GSF  AWVL  LKA R RG     ALW FE     VT  DAPG   F      G SQ
Sbjct: 2   GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 32.3 bits (70), Expect = 0.52
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = +2

Query: 725 STXMPWFXGWXVXR------XXXQADXPCLIEXLDAILXPGRPXEKPRR 853
           ++ MPWF  W + R          A    L E LD+IL P RP   P R
Sbjct: 58  TSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLR 106


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 31/76 (40%), Positives = 37/76 (48%)
 Frame = +2

Query: 341 LWXFEXXXXXVTXXDAPGXXXFXXXXXXGXSQAXCAVLXVAAGTGXFEAGISKNGXTRXX 520
           L  F+     +T  DAPG   F      G +QA  A+L V A TG FEAG    G TR  
Sbjct: 5   LTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREH 64

Query: 521 ALLAFXLGVXXLXVGV 568
           A+L   LGV  L V +
Sbjct: 65  AILVRSLGVTQLIVAI 80


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = +2

Query: 143 VVIGXVXSGXSXXXGXLXXXCGGXXXRXXEXF 238
           VVIG V SG S   G L   CGG   R  E F
Sbjct: 11  VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,030,910
Number of Sequences: 59808
Number of extensions: 97567
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)