Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A14
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    28   7.3  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    28   7.3  
At3g61970.1 68416.m06960 DNA-binding protein, putative similar t...    28   7.3  
At1g75120.1 68414.m08724 expressed protein                             28   7.3  
At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r...    28   9.7  

>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 255 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFSIF---YEKMR--EEAIALFK 398
           I  +K C    KA E F  MYK G +P  + +S     Y K    EE ++L++
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYE 280


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -1

Query: 440 CFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKES 324
           C+ E F++F  I + E+R GF      K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174


>At3g61970.1 68416.m06960 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857 and RAV2 GI:3868859, AP2 domain containing
           protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 299

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 194 EKRQKLLLLFDERSXNRWRFEXRY 123
           +  + LLL F++RS N WRF   Y
Sbjct: 58  DSNKGLLLNFEDRSGNSWRFRYSY 81


>At1g75120.1 68414.m08724 expressed protein 
          Length = 402

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = -1

Query: 803 TRTVSVSGNSNNKHLGQHLQLSKQFCLRCWGKSGNWNSWRTLRMFVFFDNSVIIKYFLVK 624
           T T+S SG  +     QHL     F     G +G + S R + ++ F ++ V+ K     
Sbjct: 303 TDTLSKSGGWDQAVFNQHL-----FYPSHPGYTGLYASKRVMDVYEFMNSRVLFKTVRKD 357

Query: 623 ATIHHLNVVHFIFNFHVDKILRI 555
             +  L  V    N+H DK+ R+
Sbjct: 358 EEMKKLKPVIIHMNYHSDKLERM 380


>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1101

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 577 WKLKIKWTTLR*WMVALTRKYFIITELSKKT 669
           W  KI   ++R W++ LT K+F   E+SK T
Sbjct: 342 WDCKIFTCSIRDWVMGLTVKHFEKFEVSKHT 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,110,647
Number of Sequences: 28952
Number of extensions: 311835
Number of successful extensions: 852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)