Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A12
         (1109 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    37   0.006
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.17 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   8.2  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 29/99 (29%), Positives = 33/99 (33%)
 Frame = -2

Query: 631 GGXGXXRGGGXGXXGGGKEEXXXRGGGXGXXRGXXXXGGGXGXYXTXGXHXGGXGIXAXG 452
           GG G  RGG  G  GG       RGG  G  R     GG  G     G   GG G  + G
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGR-----GGARGGRGGRGGARGGRGGSSGG 63

Query: 451 VSGVXXWEXIXXE*XEYXGXXXXKAXADXAXVXITVRGE 335
             G      +  E   + G    +   D       V GE
Sbjct: 64  RGGAKGGAKVIIEPHRHAGVFIARGKEDLLVTRNLVPGE 102



 Score = 33.9 bits (74), Expect = 0.041
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -2

Query: 637 WGGGXGXXRGGGXGXXGGGK-EEXXXRGGGXGXXRGXXXXGGGXGXYXTXGXHXG 476
           +GGG G  RGGG G   GG+      RGG  G   G     GG         H G
Sbjct: 28  FGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKVIIEPHRHAG 82



 Score = 30.3 bits (65), Expect = 0.50
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -2

Query: 637 WGGGXGXXRGGGXGXXGGGK-EEXXXRGGGXGXXRGXXXXGGGXG 506
           + GG G   GG  G  GGG+      RGG  G   G     GG G
Sbjct: 21  FNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 23/66 (34%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
 Frame = -2

Query: 634 GGGXGXXRG-GGXGXXGGGKEEXXXRGGGXGXXRGXXXXGGGXGXY-XTXGXHXGGXGIX 461
           GG  G   G GG G  GG   E    GG  G   G     GG G +    G   GG G  
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 460 AXGVSG 443
             G  G
Sbjct: 255 GGGPGG 260



 Score = 30.3 bits (65), Expect = 0.50
 Identities = 22/63 (34%), Positives = 23/63 (36%)
 Frame = -2

Query: 631 GGXGXXRGGGXGXXGGGKEEXXXRGGGXGXXRGXXXXGGGXGXYXTXGXHXGGXGIXAXG 452
           GG G   GG  G  GG        GG  G   G    GGG G +   G   GG G    G
Sbjct: 214 GGEGHHHGGHGGFGGG---PGGFEGGPGGFGGGPGGFGGGLGGF---GGGPGGFGGGPGG 267

Query: 451 VSG 443
             G
Sbjct: 268 HGG 270



 Score = 29.5 bits (63), Expect = 0.88
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -2

Query: 637 WGGGXGXXRGGGXGXXGGGKEEXXXRGGGXGXXRGXXXXGGGXGXYXTXG 488
           +GGG G   GG  G  GG        GG  G   G    GGG G +   G
Sbjct: 226 FGGGPGGFEGGPGGFGGG---PGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/56 (32%), Positives = 19/56 (33%)
 Frame = -2

Query: 610 GGGXGXXGGGKEEXXXRGGGXGXXRGXXXXGGGXGXYXTXGXHXGGXGIXAXGVSG 443
           GGG G  GGG        GG G   G    G   G +   G   GG      G  G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
 Frame = -2

Query: 634 GGGXGXXRGGGXGXXGGGKEEXXXRGGGXGXXR---GXXXXGGGXGXY-XTXGXHXGGXG 467
           GGG G   GGG G    G       GG  G      G    GGG G +    G   GG G
Sbjct: 187 GGGFGGF-GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245

Query: 466 IXAXGVSG 443
               G+ G
Sbjct: 246 GFGGGLGG 253


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = -2

Query: 634 GGGXGXXRGG-GXGXXGG--GKEEXXXRGGGXGXXRG 533
           GG  G  RGG G G  GG  G      RGG  G  RG
Sbjct: 152 GGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,737,434
Number of Sequences: 5004
Number of extensions: 20982
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 587693690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)