Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A11
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    27   3.6  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.7  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -2

Query: 377 IQPFSXAXXSQYFLKTSSXAPFGXAXSISVFRTFKSTXPLRQFPKVRXAASTSGTXXSA 201
           IQ  +    SQY+         G   + S  RTF S  PL   P    +A++S T  +A
Sbjct: 173 IQTSNVDLGSQYYSSPHVRPAVGATMAGSAMRTFPSNLPLGHPPPPSDSANSSVTPIAA 231


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 586 CFKFKKXVLRFSVFCWKHSGPPSAMNKAIRXPXLVAHK 473
           C +    ++R S++   HS  PS++++ +  P L  HK
Sbjct: 326 CTENPHLLVRHSIYVSIHSREPSSLSRKLAPPFLRTHK 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,034
Number of Sequences: 5004
Number of extensions: 37398
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)