Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A09
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    60   5e-10
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    28   2.0  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
 Frame = +3

Query: 243 FEXRPKXFAIGQGXSANS*LVQXCKXXQVYPHPAPEGCTSXVV*KCPLRIXQFXQTLDKT 422
           F  RP+ F IGQ       L +  K  +           +  + K P  I QF +TLDK 
Sbjct: 27  FVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRL-KVPPAIAQFQKTLDKN 85

Query: 423 TAKGLFKILEKYRPETEAXRKERL-RXXXXXXXXXXXXXXXXRXXXIRSGTNXVXKLVEK 599
           TA  +FK+L KYRPET A +K+RL                  +   ++ G N V  L+E 
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEA 145

Query: 600 KKAQ 611
           KKA+
Sbjct: 146 KKAK 149



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLVTXRNA 751
           +VDPIELV+FL  LC+KMGVP  IVK  +RLG ++  + A
Sbjct: 156 DVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTA 195


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLG 727
           + +PIE++L L  LC    VP   V   + LG
Sbjct: 56  DTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,388
Number of Sequences: 5004
Number of extensions: 21480
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)