Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A09
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    60   3e-09
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    60   3e-09
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    50   2e-06

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 42/123 (34%), Positives = 55/123 (44%)
 Frame = +3

Query: 243 FEXRPKXFAIGQGXSANS*LVQXCKXXQVYPHPAPEGCTSXVV*KCPLRIXQFXQTLDKT 422
           FE RPK F IG        L +  K  +V             + K P  + QF +TLDK 
Sbjct: 25  FEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRL-KVPPALNQFTRTLDKN 83

Query: 423 TAKGLFKILEKYRPETEAXRKERLRXXXXXXXXXXXXXXXXRXXXIRSGTNXVXKLVEKK 602
            A  LFK+L KYRPE +A +KERL                 +   ++ G N V  L+E+ 
Sbjct: 84  LATNLFKMLLKYRPEDKAAKKERL-LKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 142

Query: 603 KAQ 611
           KAQ
Sbjct: 143 KAQ 145



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLVTXRNA 751
           +VDPIELV++L  LCRKM VP  IVKG +RLG +V  + A
Sbjct: 152 DVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTA 191


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 42/123 (34%), Positives = 55/123 (44%)
 Frame = +3

Query: 243 FEXRPKXFAIGQGXSANS*LVQXCKXXQVYPHPAPEGCTSXVV*KCPLRIXQFXQTLDKT 422
           FE RPK F IG        L +  K  +V             + K P  + QF +TLDK 
Sbjct: 9   FEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRL-KVPPALNQFTRTLDKN 67

Query: 423 TAKGLFKILEKYRPETEAXRKERLRXXXXXXXXXXXXXXXXRXXXIRSGTNXVXKLVEKK 602
            A  LFK+L KYRPE +A +KERL                 +   ++ G N V  L+E+ 
Sbjct: 68  LATNLFKMLLKYRPEDKAAKKERL-LKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 126

Query: 603 KAQ 611
           KAQ
Sbjct: 127 KAQ 129



 Score = 31.5 bits (68), Expect = 0.90
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGV 691
           +VDPIELV++L  LCRKM +
Sbjct: 136 DVDPIELVVWLPALCRKMEI 155


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLVTXRNA 751
           +VDPIELV++L  LCRKM +P  IVKG +RLG +V  + A
Sbjct: 137 DVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTA 176



 Score = 34.7 bits (76), Expect = 0.097
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 283 IQPTRDLSXFVXWXKYIRIQRQKAVLQ 363
           + P +DL  FV W K +RIQRQ+ VL+
Sbjct: 39  LPPRKDLHRFVRWPKAVRIQRQRRVLK 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,676,876
Number of Sequences: 37544
Number of extensions: 165326
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)