Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A09
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   5e-09
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        53   3e-07
SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)             28   8.6  
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        28   8.6  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 31/79 (39%), Positives = 40/79 (50%)
 Frame = +3

Query: 375 KCPLRIXQFXQTLDKTTAKGLFKILEKYRPETEAXRKERLRXXXXXXXXXXXXXXXXRXX 554
           K P  I QF Q LD+ +   LFK+L KYRPET+A +K RL                 +  
Sbjct: 75  KVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPM 134

Query: 555 XIRSGTNXVXKLVEKKKAQ 611
            ++ G N +  LVE KKAQ
Sbjct: 135 LVKYGINHITSLVENKKAQ 153



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLVTXRNAHA 757
           +VDPIE+V++L  LCRKM VP  IVKG +RLG +V  +NA A
Sbjct: 160 DVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATA 201



 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = +1

Query: 283 IQPTRDLSXFVXWXKYIRIQRQKAVL 360
           IQP RDLS FV W +Y+++QRQK++L
Sbjct: 45  IQPKRDLSRFVRWPRYVKLQRQKSLL 70


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLVTXRNAHA 757
           +VDPIE+V++L  LCRKM VP  IVKG +RLG +V  +NA A
Sbjct: 69  DVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATA 110



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 23/59 (38%), Positives = 30/59 (50%)
 Frame = +3

Query: 435 LFKILEKYRPETEAXRKERLRXXXXXXXXXXXXXXXXRXXXIRSGTNXVXKLVEKKKAQ 611
           LFK+L KYRPET+A +K RL                 +   ++ G N +  LVE KKAQ
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQ 62


>SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)
          Length = 228

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 620 SSLMNVDPIELVLFLXXLCRKMGVPXXIVKGXSR 721
           S L +V PI+ VL      RK G+P  +  G S+
Sbjct: 88  SELASVSPIQCVLKYVHEARKRGIPVAVASGSSK 121


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLG 727
           + +P+E++L L  LC    VP   V+  + LG
Sbjct: 118 DTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,349,165
Number of Sequences: 59808
Number of extensions: 182039
Number of successful extensions: 241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)