Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A09
         (866 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    62   2e-11

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score = 62.5 bits (145), Expect = 2e-11
 Identities = 42/123 (34%), Positives = 54/123 (43%)
 Frame = +3

Query: 243 FEXRPKXFAIGQGXSANS*LVQXCKXXQVYPHPAPEGCTSXVV*KCPLRIXQFXQTLDKT 422
           FE R K + IGQ       L +  K  +              + K P  I QF QTLDK 
Sbjct: 38  FEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQKRL-KIPPPINQFTQTLDKP 96

Query: 423 TAKGLFKILEKYRPETEAXRKERLRXXXXXXXXXXXXXXXXRXXXIRSGTNXVXKLVEKK 602
           TA+ + K  +KYRPE    R +RL+                R   +R G N V K+VE+K
Sbjct: 97  TAQQVMKCWKKYRPENPIARVQRLKAKAEAKAAGKEEPPSKRANQLRQGINSVVKMVEQK 156

Query: 603 KAQ 611
           KAQ
Sbjct: 157 KAQ 159



 Score = 54.0 bits (124), Expect = 6e-09
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLV 736
           +VDPIELV++L  LCRKMGVP  I+KG +RLG LV
Sbjct: 166 DVDPIELVVYLPALCRKMGVPYCIIKGKARLGTLV 200



 Score = 46.0 bits (104), Expect = 1e-06
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +1

Query: 283 IQPTRDLSXFVXWXKYIRIQRQKAVLQ 363
           +QP RDLS FV W KYIRIQR +A+LQ
Sbjct: 51  VQPKRDLSRFVKWPKYIRIQRHRAILQ 77



 Score = 29.1 bits (62), Expect = 0.18
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 739 RKKCTCLXLXNVESGXRAXFXKVVEAIK 822
           RK CTC+ L   E+  +    K+VE IK
Sbjct: 202 RKTCTCVALTQFENADKPNLAKLVETIK 229


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,202
Number of Sequences: 2352
Number of extensions: 6368
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 92613024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)