Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A09
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    60   2e-09
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    47   2e-05
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    43   2e-04
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    43   2e-04
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U13646-4|AAC24420.1|  211|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 38/123 (30%), Positives = 54/123 (43%)
 Frame = +3

Query: 243 FEXRPKXFAIGQGXSANS*LVQXCKXXQVYPHPAPEGCTSXVV*KCPLRIXQFXQTLDKT 422
           FE R + F IGQ       + +  K  + Y     +        K P  I QF   LD  
Sbjct: 33  FEKRARNFNIGQDIQPKKDVTRFVKWPK-YIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 423 TAKGLFKILEKYRPETEAXRKERLRXXXXXXXXXXXXXXXXRXXXIRSGTNXVXKLVEKK 602
           +A+  FK+L+KYRPE+   +K RLR                R   +R G N + +LVE +
Sbjct: 92  SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETR 151

Query: 603 KAQ 611
           +AQ
Sbjct: 152 RAQ 154



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLVTXRNAHA 757
           +V+P+E+VL L  LCRK  VP  I+KG + LG +V  +   A
Sbjct: 161 DVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAA 202


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 29/85 (34%), Positives = 40/85 (47%)
 Frame = +3

Query: 243 FEXRPKXFAIGQGXSANS*LVQXCKXXQVYPHPAPEGCTSXVV*KCPLRIXQFXQTLDKT 422
           FE R + F IGQ       + +  K  + Y     +        K P  I QF   LD  
Sbjct: 136 FEKRARNFNIGQDIQPKKDVTRFVKWPK-YIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 423 TAKGLFKILEKYRPETEAXRKERLR 497
           +A+  FK+L+KYRPE+   +K RLR
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLR 219


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +1

Query: 283 IQPTRDLSXFVXWXKYIRIQRQKAVLQ 363
           IQP +D++ FV W KYIR+QRQ A+LQ
Sbjct: 149 IQPKKDVTRFVKWPKYIRLQRQSAILQ 175


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +1

Query: 283 IQPTRDLSXFVXWXKYIRIQRQKAVLQ 363
           IQP +D++ FV W KYIR+QRQ A+LQ
Sbjct: 46  IQPKKDVTRFVKWPKYIRLQRQSAILQ 72



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLVTXRNAHA 757
           +V+P+E+VL L  LCRK  VP  I+KG + LG +V  +   A
Sbjct: 141 DVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAA 182



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 35/123 (28%), Positives = 50/123 (40%)
 Frame = +3

Query: 243 FEXRPKXFAIGQGXSANS*LVQXCKXXQVYPHPAPEGCTSXVV*KCPLRIXQFXQTLDKT 422
           FE R + F IGQ       + +  K  + Y     +        K P  I QF   LD  
Sbjct: 33  FEKRARNFNIGQDIQPKKDVTRFVKWPK-YIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 423 TAKGLFKILEKYRPETEAXRKERLRXXXXXXXXXXXXXXXXRXXXIRSGTNXVXKLVEKK 602
           +A+  FK+L+KYRPE+    K                    R   +R G N + +LVE +
Sbjct: 92  SARQAFKLLDKYRPESTEVTK--------------------RPNTVRHGVNTITRLVETR 131

Query: 603 KAQ 611
           +AQ
Sbjct: 132 RAQ 134


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLG 727
           + +P+E++L L  LC    VP   V+  + LG
Sbjct: 59  DAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90


>U13646-4|AAC24420.1|  211|Caenorhabditis elegans Hypothetical
           protein ZK783.3 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 113 KATKRDXTESGD-QNLRRKGPKTKSMXEGPSRRGRXK 6
           K T R  ++S D  N ++KG KT    EGPS+  R K
Sbjct: 14  KRTLRRRSKSTDASNDQKKGTKTVDGAEGPSKASRVK 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,032
Number of Sequences: 27780
Number of extensions: 131676
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)