Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A09
         (866 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    59   3e-09
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            59   4e-09

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 42/123 (34%), Positives = 55/123 (44%)
 Frame = +3

Query: 243 FEXRPKXFAIGQGXSANS*LVQXCKXXQVYPHPAPEGCTSXVV*KCPLRIXQFXQTLDKT 422
           FE RPK F IG        L +  K  +       +      + K P  + QF +TLDK 
Sbjct: 23  FERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRL-KVPPALNQFTKTLDKN 81

Query: 423 TAKGLFKILEKYRPETEAXRKERLRXXXXXXXXXXXXXXXXRXXXIRSGTNXVXKLVEKK 602
            A  LFKIL KYRPE +A +KERL                 +   ++ G N V  L+E+ 
Sbjct: 82  LATSLFKILLKYRPEDKAAKKERL-LNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQN 140

Query: 603 KAQ 611
           KAQ
Sbjct: 141 KAQ 143



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLVTXRNAHA 757
           +VDPIELV++L  LCRKM VP  IVKG SRLG +V  + A A
Sbjct: 150 DVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAA 191


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 41/123 (33%), Positives = 55/123 (44%)
 Frame = +3

Query: 243 FEXRPKXFAIGQGXSANS*LVQXCKXXQVYPHPAPEGCTSXVV*KCPLRIXQFXQTLDKT 422
           FE RPK F IG        L +  K  +       +      + K P  + QF +TLDK 
Sbjct: 24  FERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRL-KVPPALNQFTKTLDKN 82

Query: 423 TAKGLFKILEKYRPETEAXRKERLRXXXXXXXXXXXXXXXXRXXXIRSGTNXVXKLVEKK 602
            A  LFK+L KYRPE +A +KERL                 +   ++ G N V  L+E+ 
Sbjct: 83  LATSLFKVLLKYRPEDKAAKKERL-VKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIEQN 141

Query: 603 KAQ 611
           KAQ
Sbjct: 142 KAQ 144



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 25/40 (62%), Positives = 30/40 (75%)
 Frame = +2

Query: 632 NVDPIELVLFLXXLCRKMGVPXXIVKGXSRLGXLVTXRNA 751
           +VDPIELV++L  LCRKM VP  IVKG SRLG +V  + A
Sbjct: 151 DVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTA 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,602,931
Number of Sequences: 28952
Number of extensions: 124223
Number of successful extensions: 177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)