Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_A08
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 120 4e-28
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 76 7e-15
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 73 7e-14
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 65 1e-11
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 58 2e-09
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 56 6e-09
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 50 3e-07
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 45 1e-05
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 26 6.0
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 120 bits (288), Expect = 4e-28
Identities = 56/100 (56%), Positives = 75/100 (75%)
Frame = +3
Query: 348 IXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQA 527
I V HPAAKSMIE+ARTQDE VG GTTSV +LAG +LA A P L + IHP V+IR ++QA
Sbjct: 68 IEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQA 127
Query: 528 LEDAIVLLQDKISVPVDLXDXXXXXXVIRSCVGTXYIGRW 647
LEDA+ ++ D+I++PV++ D +IR+C+GT + RW
Sbjct: 128 LEDALSII-DEITLPVNVDDNAEMFRLIRTCIGTKLVARW 166
Score = 81.0 bits (191), Expect = 2e-16
Identities = 36/63 (57%), Positives = 46/63 (73%)
Frame = +2
Query: 155 PILVLSQNTKRXSGRKVQLENISAGKXXADVIXTCLGPQAMLKMLMDPMGGXVMTXDGNA 334
P+ V++ N R G K Q+ NI A K ADVI TCLGP+AMLKML+DP+G ++T DG+A
Sbjct: 4 PVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHA 63
Query: 335 ILR 343
ILR
Sbjct: 64 ILR 66
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 75.8 bits (178), Expect = 7e-15
Identities = 36/98 (36%), Positives = 56/98 (57%)
Frame = +3
Query: 348 IXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQA 527
+ V+HPA K ++E+A+ QD+ VG GTTSV ++A +L A + IHPT II YR A
Sbjct: 70 LDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLA 129
Query: 528 LEDAIVLLQDKISVPVDLXDXXXXXXVIRSCVGTXYIG 641
+ +A+ + D +S VD V ++ + + IG
Sbjct: 130 IREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIG 167
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +2
Query: 182 KRXSGRKVQLENISAGKXXADVIXTCLGPQAMLKMLMDPMGGXVMTXDGNAIL 340
++ SG V+ +N+ A A+V+ + LGP + KML+D +G +T DG IL
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 67
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 72.5 bits (170), Expect = 7e-14
Identities = 36/94 (38%), Positives = 57/94 (60%)
Frame = +3
Query: 348 IXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQA 527
+ + HPAAK++++IAR QD VG GTTSV V AG +L A F+ + +IIR YR+A
Sbjct: 73 LDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKA 132
Query: 528 LEDAIVLLQDKISVPVDLXDXXXXXXVIRSCVGT 629
+ A+ +++ I++ +DL D ++ C T
Sbjct: 133 AQLAVNKIKE-IAIHLDLSDEGKLRDLLTKCAST 165
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +2
Query: 155 PILVLSQNTKRXSGRKVQLENISAGKXXADVIXTCLGPQAMLKMLMDPMGGXVMTXDGNA 334
P++VL + T GR L NI+A D I T LGP K+++D G V++ DG
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGAT 68
Query: 335 ILR 343
I++
Sbjct: 69 IMK 71
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +3
Query: 348 IXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQA 527
+ V HPAAK +++++ QD G GTTSV +LAG MLA A L + IHPTVI +++A
Sbjct: 68 LSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRA 127
Query: 528 LEDAIVLLQDKISVPVDLXD 587
+ +++ ++ ++L D
Sbjct: 128 AGFTVDCMKEN-ALAIELSD 146
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +2
Query: 185 RXSGRKVQLENISAGKXXADVIXTCLGPQAMLKMLMDPMGGXVMTXDGNAILR 343
R ++V+L NI A + AD I T LGP+ M KM+ G ++T DG IL+
Sbjct: 14 REKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILK 66
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/75 (40%), Positives = 46/75 (61%)
Frame = +3
Query: 354 VQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQALE 533
V+H AK +++++++QD+ +G GTT V VLAG +L A + + IHP I Y +A +
Sbjct: 85 VEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQ 144
Query: 534 DAIVLLQDKISVPVD 578
A+ L D IS VD
Sbjct: 145 VAVKHL-DAISDVVD 158
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 56.0 bits (129), Expect = 6e-09
Identities = 30/69 (43%), Positives = 41/69 (59%)
Frame = +3
Query: 348 IXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQA 527
I + + AAK ++ I++ QD+ VG GTTSV V A +L A + IHP VII YR A
Sbjct: 70 IALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIA 129
Query: 528 LEDAIVLLQ 554
+ AI L+
Sbjct: 130 TKTAIDALR 138
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 354 VQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQALE 533
+Q+P A + + A QD+ G GTTSV +L G +L A ++ + +HP++I + A
Sbjct: 67 IQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKN 126
Query: 534 DAIVLLQD-KISVPVD 578
+A+ L K VD
Sbjct: 127 EALTFLDSFKTDFEVD 142
Score = 39.9 bits (89), Expect = 5e-04
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 215 NISAGKXXADVIXTCLGPQAMLKMLMDPMGGXVMTXDGNAILRXN--XSPTSSC 370
NISA DV+ + LGP KML+D G +T DG +L +PT+SC
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASC 74
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +3
Query: 348 IXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQA 527
+ V HPAAK +++ + Q+ +G V V G +LA A + + P I + Y A
Sbjct: 75 LEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMA 134
Query: 528 LEDAIVLLQDKISVPVD-LXDXXXXXXVIRSCVGTXYIG 641
L + +L++ + ++ + IR+C+ + G
Sbjct: 135 LSHTMEVLEEICADKIETVESEKELIKAIRTCISSKQYG 173
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 278 TWPEVRGXXL*HRLXXXLH*YFQAELSGRTHVLYFG*EL 162
TWPE+ G + +R L +L+G + Y+G E+
Sbjct: 253 TWPEIFGPDIRYRTFLGLGVMSLQQLTGDNYYFYYGFEV 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,299
Number of Sequences: 5004
Number of extensions: 30327
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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