Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A08
         (861 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   5e-19
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   5e-19
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  57   2e-08
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   57   2e-08
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   6e-07
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      44   1e-04
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              41   0.001
SB_21487| Best HMM Match : MAM (HMM E-Value=0)                         29   4.9  
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              28   8.5  

>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 44/72 (61%), Positives = 55/72 (76%)
 Frame = +3

Query: 348 IXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQA 527
           I V+HPAAKSMIEI+RTQDE VG GTTSV +LAG  ++ A PFL Q +HPT II  YR A
Sbjct: 12  IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 71

Query: 528 LEDAIVLLQDKI 563
           ++D I +L+ +I
Sbjct: 72  MDDMIDILKQQI 83


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 44/72 (61%), Positives = 55/72 (76%)
 Frame = +3

Query: 348 IXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQA 527
           I V+HPAAKSMIEI+RTQDE VG GTTSV +LAG  ++ A PFL Q +HPT II  YR A
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268

Query: 528 LEDAIVLLQDKI 563
           ++D I +L+ +I
Sbjct: 269 MDDMIDILKQQI 280



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 170 SQNTKRXSGRKVQLENISAGK 232
           +QNTKR SGRKVQL N+ A K
Sbjct: 188 NQNTKRESGRKVQLGNVQAAK 208


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = +3

Query: 342 GXIXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYR 521
           G + V H  AK M+E++++QD  +G GTT V VLAG +L  A   L   IHP  I   Y 
Sbjct: 77  GMMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYE 136

Query: 522 QALEDAIVLLQDKI--SVPVDLXDXXXXXXVIRSCVGTXYIGR 644
            A + A+  + D I  + PVD  +         + +G+  + R
Sbjct: 137 LAAKIALEHM-DSIADNFPVDKDNKESLIQTAMTTLGSKIVSR 178



 Score = 36.7 bits (81), Expect = 0.024
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 215 NISAGKXXADVIXTCLGPQAMLKMLMDPMGGXVMTXDGNAIL 340
           +I A +  A ++ T LGP+ M KM++ P G   +T DG  IL
Sbjct: 35  HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATIL 76


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/64 (39%), Positives = 42/64 (65%)
 Frame = +3

Query: 348 IXVQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQA 527
           I + +PAAK ++E+++ QD+ VG GTTSV VL   +L  A   ++  IHP  I+  +R++
Sbjct: 71  IGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKS 130

Query: 528 LEDA 539
           ++ A
Sbjct: 131 VKAA 134


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +3

Query: 354 VQHPAAKSMIEIARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQALE 533
           +QHP A  +  +A  QD+  G GTTS  ++ G +L  A  ++++ +HP ++   +  A +
Sbjct: 171 IQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKK 230

Query: 534 DAIVLLQD-KISVPVD 578
            A+ +L++ K+S  +D
Sbjct: 231 KALEVLEEVKVSREMD 246


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 20/51 (39%), Positives = 33/51 (64%)
 Frame = +3

Query: 387 IARTQDEXVGXGTTSVXVLAGXMLAXAXPFLTQNIHPTVIIREYRQALEDA 539
           +++ QD+ VG GTTSV VLA  +L  A   ++  IHP  I+  +R++++ A
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAA 52


>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 447 GXMLAXAXPFLTQNIHPTVIIREYRQALEDAIVLLQDKI 563
           G  ++ A PFL Q +HPT II  YR A++D I +L+ +I
Sbjct: 2   GEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +2

Query: 197 RKVQLENISAGKXXADVIXTCLGPQAMLKMLMDPMGGXVMTXDGNAI 337
           +++++ NI+A K  AD I T LGP+ M KM+    G   +T DG  I
Sbjct: 23  QEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
          Length = 874

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 395 PCDFDHRFCSWMLDXDXP*V*HYHRXSSRXXP*GP 291
           PCDF+  FC W+   D       H+ S+     GP
Sbjct: 204 PCDFEQGFCQWLQSSDSDFQWTRHKGSTASLDTGP 238


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 9/19 (47%), Positives = 17/19 (89%)
 Frame = +3

Query: 348 IXVQHPAAKSMIEIARTQD 404
           + + HPAAK++++IA++QD
Sbjct: 704 LDIVHPAAKTLVDIAKSQD 722


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,129,344
Number of Sequences: 59808
Number of extensions: 237535
Number of successful extensions: 272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)