Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A07
         (981 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   8.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 651 PPPPXPXXPPP 683
           PPPP P   PP
Sbjct: 736 PPPPHPHHQPP 746



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 918 LPPPPPXXPXPPPXTSPP 971
           +PP P   P PP  +S P
Sbjct: 230 IPPHPGLSPHPPHLSSHP 247


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 651 PPPPXPXXPPP 683
           PPPP P   PP
Sbjct: 628 PPPPHPHHQPP 638



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 918 LPPPPPXXPXPPPXTSPP 971
           +PP P   P PP  +S P
Sbjct: 122 IPPHPGLSPHPPHLSSHP 139


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +3

Query: 654 PPPXPXXPPPSTRPXLALSXPXXPPPPPXP 743
           PP      P  + P LA      P  PP P
Sbjct: 72  PPKREIPSPKRSSPILAEKVSVSPTTPPTP 101


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 920 PPPPPXXTXPPPPXIPP 970
           PP P     P PP  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,345
Number of Sequences: 336
Number of extensions: 2004
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27823477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)