Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_A07
(981 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 41 2e-04
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 41 3e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 37 0.005
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.11
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 32 0.14
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.1
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.3
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 41.1 bits (92), Expect = 2e-04
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +1
Query: 193 PVTKXVESWFXXNXR-NXXWXEXLIELXTFXXVEXFWXLXHHIKLXSXLCXGXXXVVFXX 369
P+ + WF W E + TF VE FW + ++I S L F
Sbjct: 39 PLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDYSFFRE 98
Query: 370 GXRPMWEXXAXXMGGXW 420
G RP WE GG W
Sbjct: 99 GVRPEWEDVHNKTGGKW 115
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 40.7 bits (91), Expect = 3e-04
Identities = 20/58 (34%), Positives = 24/58 (41%)
Frame = +1
Query: 247 WXEXLIELXTFXXVEXFWXLXHHIKLXSXLCXGXXXVVFXXGXRPMWEXXAXXMGGXW 420
W + L E+ +F VE FW + I S L F G RP WE GG W
Sbjct: 84 WSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDYSYFLKGIRPEWEDPQNMNGGKW 141
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 36.7 bits (81), Expect = 0.005
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXPPPP 734
PPPP PPP + P + P PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 35.5 bits (78), Expect = 0.012
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXPPPPPXP 743
PPPP PPPS P A P PPPP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPA--GPPSAPPPPLP 1736
Score = 31.1 bits (67), Expect = 0.25
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P PPPPP PPP S PP P
Sbjct: 1705 PTPPPPPMSVPPPP--SAPPMP 1724
Score = 30.3 bits (65), Expect = 0.43
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +3
Query: 918 LPPPPPXXPXP--PPXTSPPPXP 980
+PPPP P P PP PPP P
Sbjct: 1714 VPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +3
Query: 915 PLPPPPPXXPXPP-PXTSPPPXP 980
P+P PP P PP P +S P P
Sbjct: 1722 PMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.11
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 654 PPPXPXXPPPSTRPXLALSXPXXPPPPP 737
PP P PPS P L + P PP PP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 921 PPPPPXXPXPPPXTSPPP 974
PP PP P PPP +P P
Sbjct: 467 PPLPPAAPAPPPAPAPAP 484
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 651 PPPPXPXXPPPSTR--PXLALSXPXXPPPPPXP 743
PPPP P P + R P L+ S PP P P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +3
Query: 654 PPPXPXXPP-PSTRPXLALSXPXXPPPPPXP 743
PP P PP P+ P P P PPP P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +3
Query: 666 PXXPPPSTRPXLA--LSXPXXPPPPPXP 743
P PPPS+R A + PPPPP P
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXL--ALSXPXXPPPPPXP 743
PPPP P +P + S PPPPP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 654 PPPXPXXPPPSTRPXLALSXPXXPPPPP 737
PP P PP P +LS P PP PP
Sbjct: 233 PPSIPSSRPPERVP--SLSAPAPPPIPP 258
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXPPPPP 737
PPPP P + P PPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXP-----XXPPPPPXP 743
PP P P PPS P L S P P PP P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 496 PXXXPXXLTCPXXAPXXXPAPXPPXXXPLASXSPPP 603
P P P AP PAP P P+AS + P
Sbjct: 460 PAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 921 PPPPPXXPXPPPXTSPPP 974
PPPPP P PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 31.9 bits (69), Expect = 0.14
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 657 PPXPXXPPPSTRPXLALSXPXXPPPPPXP 743
PP PP + P +L PPPPP P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPP 195
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPP 971
PLP PPP PPP T PP
Sbjct: 234 PLPAPPP----PPPPTLPP 248
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P PPPPP PP T+ P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLP 257
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P PPPPP P TS P P
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMP 259
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 920 PPPPPXXTXPPPPXIPPPXT 979
P PPP PPPP +PP T
Sbjct: 236 PAPPP----PPPPTLPPQST 251
Score = 25.8 bits (54), Expect(2) = 0.81
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 678 PPSTRPXLALSXPXXPPPPP 737
PP+ P A P PPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPP 243
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 651 PPPPXPXXPPPST 689
PPPP P PP ST
Sbjct: 239 PPPPPPTLPPQST 251
Score = 21.8 bits (44), Expect(2) = 0.81
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLA 704
PPPP P PPP+ A
Sbjct: 189 PPPPPP--PPPAVEDQAA 204
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.14
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P PPPPP PP PPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 30.3 bits (65), Expect = 0.43
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXPPPPPXP 743
P P P PPP P P PPPPP P
Sbjct: 6 PGNPPPPPPPPGFEP------PSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 918 LPPPPPXXPXPPPXTSPPPXP 980
LPP P P PPP PP P
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQP 24
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +3
Query: 915 PLPPPPPXXP--XPPPXTSPPPXP 980
P PPPP P PP PPP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 654 PPPXPXX---PPPSTRPXLALSXPXXPPPPPXP 743
PPP P PPP P +A + P PPPPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGP--PPPPPPP 782
Score = 31.9 bits (69), Expect = 0.14
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXPPPPPXP 743
PP P PPP P PPPPP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.76
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P+PPP P PPP PPP P
Sbjct: 750 PVPPPAPIMGGPPP---PPPPP 768
Score = 29.5 bits (63), Expect = 0.76
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P PPPPP P PPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 496 PXXXPXXLTCPXXAPXXXPAPXPPXXXPLASXSPPP 603
P P + P AP P PP +A PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
Frame = +3
Query: 921 PPPPPXXP-----XPPPXTSPPP 974
PPPPP P PPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXP----PPPPXP 743
PPPP P P+ P P P PPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Frame = +3
Query: 921 PPPPPXX----PXPPPXTSPPPXP 980
PPPPP P P P PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAP 756
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXX-----PPPPPXP 743
PPPP P P+ P + + P PPPPP P
Sbjct: 734 PPPPAVIVPTPAPAP-IPVPPPAPIMGGPPPPPPPP 768
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P P P P P P PPP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPP 765
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPP 974
P PPPPP P P PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +3
Query: 651 PPPPXPXXP--PPSTRPXLALSXPXXPPPPPXP 743
PPP P P P + P L + P PP P P
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 921 PPPPPXXPXPPPXTSPPPXP 980
P PPP P P P + P P
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXP---PPPPXP 743
PP P P P++ P + P P PPP P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -1
Query: 603 GGXGX--GGKGGXXGGXGGGXXXGRXXGACKXGXVXXGXXXG 484
GG G GG+GG GG GG GR G + G G G
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGR--GGARGGRGGRGGARG 55
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -1
Query: 594 GXGGKGGXXGGXGG--GXXXGRXXGA 523
G GG+GG GG GG G G GA
Sbjct: 46 GRGGRGGARGGRGGSSGGRGGAKGGA 71
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXPPP---PPXP 743
PP P P PP +P ++ P PPP PP P
Sbjct: 1189 PPVPPPSEAPPVPKP--SVGVPPVPPPSTAPPVP 1220
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P+PPP P P P PP P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVP 1211
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXPPPPPXP 743
PP P P PP P + P PPP P P
Sbjct: 1041 PPVPIPTSTPPV--PKSSSGAPSAPPPVPAP 1069
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P+PPP P P P PP P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVP 1230
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLA---LSXPXXPPPPPXP 743
PP P P PP +P +A + P PP P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLA---LSXPXXPPPPPXP 743
PP P P PP +P +A + P PP P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P+P P P P P + PP P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVP 1105
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P+P P P P P + PP P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVP 1134
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXP----PPPPXP 743
PP P P PP +P +A P PP P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P+P P P P P + PP P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVP 1172
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P+P P P PP + PP P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVP 1201
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXPPPPP 737
P P PPPS P + PP PP
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 915 PLPPPPPXXPXPPPXTSPPPXP 980
P+P P P PP ++ PP P
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVP 1220
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 651 PPPPXPXXPPPSTRPXLALSXPXXPPPP 734
P P PPPST P + PP P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 654 PPPXPXXPPPSTR-PXLALSXPXXPPPPP 737
P P PP S+R P ++ + P P PPP
Sbjct: 1048 PSVTPQLPPVSSRLPPVSATRPQIPQPPP 1076
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = -1
Query: 603 GGXGXGGKGGXXGGXGG--GXXXGRXXGACKXG 511
G G GG+GG GG GG G G G G
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGG 165
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -1
Query: 603 GGXGX--GGKGGXXGGXGGGXXXGRXXGA 523
GG G GG+GG GG GG G G+
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGS 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,810
Number of Sequences: 5004
Number of extensions: 22036
Number of successful extensions: 506
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -