Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A07
         (981 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.60 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.60
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 924 PPPPXXPXPPPXTSPP 971
           PP P  P PPP +S P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 651 PPPPXPXXPPPST 689
           PP P P  PPPS+
Sbjct: 338 PPKPAPPPPPPSS 350



 Score = 22.6 bits (46), Expect = 5.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 927 PPPXXPXPPPXTSPPP 974
           PP   P PPP +S  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 131 LSLKXRPXVTRRCPLQF 181
           ++L+  P  T+RCPLQF
Sbjct: 132 MNLENFPMDTQRCPLQF 148


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 651 PPPPXPXXPPPSTRPXLALSXP 716
           PPP  P   PPS  P   +  P
Sbjct: 46  PPPGGPPGAPPSQNPSQMMISP 67


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 915 PLPPPPP 935
           PLPPPPP
Sbjct: 374 PLPPPPP 380



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 979 GXGGGDVXGGGXGXXGGGGGXG 914
           G  GG +  G     GGGGG G
Sbjct: 33  GASGGSIVVGANNG-GGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,012
Number of Sequences: 438
Number of extensions: 5083
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)