Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A05
         (899 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P13276 Cluster: Apolipophorin-3 precursor; n=11; Ditrys...    69   2e-10

>UniRef50_P13276 Cluster: Apolipophorin-3 precursor; n=11;
           Ditrysia|Rep: Apolipophorin-3 precursor - Manduca sexta
           (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 189

 Score = 68.5 bits (160), Expect = 2e-10
 Identities = 48/136 (35%), Positives = 56/136 (41%)
 Frame = +1

Query: 256 FNSLXXSKXAXXFXXAWKXGSESVLQXLXAFAKXLQGXARXRERXGXGGFGTVEAXXXXX 435
           FNSL  SK    F  A K GS+SVLQ L AF+  LQG                       
Sbjct: 50  FNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKT 109

Query: 436 XXXXXXXXXXTSRXTPXXSXXKLQAAVXNXVXXSQKLAXXVSSNVXXXNEXLXPXIXXXY 615
                       +        KLQAAV   V  SQKLA  V+SN+   N+ L P I   Y
Sbjct: 110 AEELRKAHPDVEKEANAFKD-KLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAY 168

Query: 616 XDFAKNXXEVXQKXQE 663
            DF K+  EV +K  E
Sbjct: 169 DDFVKHAEEVQKKLHE 184



 Score = 36.7 bits (81), Expect = 0.81
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 368 ALGXANGXAXEALEXSRXXXERXAEXLRKAXP 463
           A+  ANG A EALE +R   E+ AE LRKA P
Sbjct: 87  AISDANGKAKEALEQARQNVEKTAEELRKAHP 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,011,642
Number of Sequences: 1657284
Number of extensions: 2422811
Number of successful extensions: 3037
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3037
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)