Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_A04
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 29 0.88
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 27 2.7
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 2.7
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 27 3.6
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 4.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.7
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 26 6.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 6.2
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 6.2
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 26 6.2
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 29.1 bits (62), Expect = 0.88
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 483 PVATSTTGPLQIPQQASTPIVRPEQTCQTSETVVQGPR 596
PV S T P P +STP+ QT T V P+
Sbjct: 580 PVTASETSPPHAPAVSSTPVTSAPPVSQTKVTKVSVPK 617
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 565 KRQKQWSKGRDKICKGTLIFSDEFEKNSLKDLTSWGAEVRFPEXPDYPFNVYTTD 729
K +QW KG K C + EF+K K +G F E Y FNV+ D
Sbjct: 25 KELQQWYKGFFKDCPSGHLNKSEFQK-IYKQFFPFGDPSAFAE---YVFNVFDAD 75
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 474 ANPPVATSTTGPLQIPQQASTPIVRPEQTCQT 569
A+ ++ ++T P ++ AST IVRP QT
Sbjct: 257 ASGSISKNSTSPSKVKVNASTKIVRPVSAAQT 288
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +1
Query: 583 SKGRDKICKGTLIFSDEFEKNSLKDLT-SWG-AEVRFP------EXPDYPFNVYTTDGTI 738
+KGR CKG+ + +D F ++ L+ L S G +R+P PF V + G +
Sbjct: 42 NKGRLYQCKGSGMVADVFSQHQLRQLVGSMGIGHLRYPTAGSCAHSEAQPFYVNSPYGLV 101
Query: 739 GFDSGSLIISPVL 777
+G+LI P L
Sbjct: 102 LGHNGNLINGPEL 114
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 632 SSLKIKVPLQILSRPLDHCF*RLARLFR-SNDRSAGLLGYLQ 510
S +K+P +LS DHC R+ L+ S + A LL +LQ
Sbjct: 1502 SQSDVKIPDSLLSEVFDHC--RIVSLYTVSASQDAELLRWLQ 1541
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +3
Query: 429 TVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTCQTSETVVQGP 593
T T + N +P+ + TST+ P STPI TS T + P
Sbjct: 210 TSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIP 264
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 535 LLSLDRNRRAKRQKQWSKGRDK 600
+LS +R KRQ++W GR+K
Sbjct: 31 VLSKSALKRLKRQQEWDAGREK 52
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 471 VANPPVATSTTGPLQIPQQASTP 539
+ P + STT P +PQ +STP
Sbjct: 397 ILKKPSSLSTTDPTLVPQSSSTP 419
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 477 NPPVATSTTGPLQIPQQASTPIVR 548
NP A+STTG I Q S P +R
Sbjct: 77 NPSAASSTTGENSISQTGSGPFLR 100
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 538 LSLDRNRRAKRQKQWSKGRDKICKGTLIFSDEFEKNSLK 654
++ +R RR + +K W + RD F + +KN+LK
Sbjct: 161 IARERKRRVESEKVWEETRDNRVGNWQDFLHKTKKNNLK 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,411,678
Number of Sequences: 5004
Number of extensions: 68125
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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